Rhipicephalus microplus (southern cattle tick): 119182959
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Entry
119182959 CDS
T07403
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03013
Nucleocytoplasmic transport
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119182959
03015 mRNA surveillance pathway
119182959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119182959
Enzymes [BR:
rmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119182959
5.6.2.5 RNA 5'-3' helicase
119182959
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119182959
mRNA cycle factors
Common to processing body (P body) and stress granule
119182959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
AAA_16
ATPase
DEAD
Helicase_RecD
nSTAND3
SRP54
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
119182959
NCBI-ProteinID:
XP_037289429
LinkDB
All DBs
Position
1:226470780..226508929
Genome browser
AA seq
1127 aa
AA seq
DB search
MSMSVDAYGPSSQTLTFLDTEEASDLLGADTQGSEFDFTDFTLPSQTQASQGDGGQTQGS
RGGQLPGEVRSNGLEVAAAGQALGELTFEEDEEDQYYAKDLPEHACKYCGIHDPGCVVQC
NVCKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNVFVLGFI
PAKADSVVVLLCRHPCAAQSSLKDMNWDPDQWKPLIHDRCFLPWLVRAPLERDQLRARQV
TAQQISRLEELWKDNVDASFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYD
KKLKESQTQDNIEVRWDIGLNKKMIAYFTVAKSDTDMRLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFAVDECSV
SAYIYHRLLGHEVEDVVMRCPLPKHFSAPQLPELNRSQVYAVKHALQRPLSLIQGPPGTG
KTVTSATVVYHLAKQSTGPVLVCAPSNIAVDQLTEKVHQTGLRVVRLCAKSREALNSPVS
FLALHNQIRSMDGHSELHKLQQLKDETGELSSADEKRYRMLKKACERELLEAADVICCTC
VGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPLRLEVQYRMHPQLAQFPSNFFYEGSLQNGVFADERRMRGLDF
PWPQPERPMLFYACQGQEEMAGSGTSYLNRTEAALVEKICTRFLRSGVKPQQVGVITPYE
GQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIGFLNDPR
RLNVALTRARYGLIIVGNPKVLSKQPLWNHLLTFYKENRVLVEGPLNNLKESLIQFSKPR
KLVNTVNPGGHFMNTTVFDAREAMVPGSVYDRSSQLNGGPDWRGTGRGAWAPLKENFTET
GFGRHHDPLAYIGPAERAAANPGLPVPVGLFMNMAHVPPRFYNQHQQALQARRGAAGSAK
GPPPRRTARNQQQQQPPPGRRAPSGSQFNSQASQGALSQPGGSGPLSQPGGVGALSQLSQ
ESCFLGEELRSQAEGMLSQDSSYQGDRHCFGQPPSSSTAHFAAQQPY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgagtgtcgacgcgtacggaccgagctcgcagacgctcacattcctcgacacg
gaggaagccagcgacttgctgggagccgacacgcagggatcagagtttgatttcacagac
tttacgctaccttcccaaacccaagcgtcgcaaggagatggcggacagacacaaggaagc
cgtggtggacagcttcctggggaagtgcgcagcaatggcttggaggtggctgcagctgga
caggccctgggagagctcacatttgaggaggatgaagaagaccagtactatgccaaggat
ctgcctgagcatgcctgcaagtactgcggcattcacgatcccgggtgcgttgttcagtgc
aatgtgtgcaagcgctggttctgcaatggccgaggcaacacttcaggcagccacatggtg
aaccacctggtgcgagccaagcataaggaggtgaccctccacagagacggcccactcggg
gagacagtgctcgagtgctactcgtgcgcttgccgcaacgtcttcgtcctcggcttcatc
ccggctaaggcggactctgtggtcgtgctgctttgtcgacacccatgcgccgcccaatcc
tccctcaaggacatgaactgggacccagaccagtggaagccactcatccatgaccgctgc
ttcttgccttggctggtgcgtgcacctcttgaaagagaccagctgcgtgcccgccaggtg
actgcccagcagatttcgaggctcgaagagctctggaaggacaatgtggatgctagcttt
caggatttggagaagcctggtgttgatgaggaaccccagcaagtactgctgaggtatgag
gatggttaccagtaccaaaatatctttggccccttggtcaaaatggaagcagactatgac
aagaagctgaaggagtcgcagacgcaggacaacatagaggtccgctgggacatcggactg
aacaaaaaaatgattgcctacttcacggtggcaaagtctgatacagatatgcgactgatg
catggtgatgagctacgactgcgttaccttggggaactgcacaagccatggtctggtgta
ggccatgtcatcaagatacctgacaactacagtgaggaagttggcatcgaaatgaagacc
aacttgggtgtcccatcagagtgcacatctaattttgtggttgactttgtgtggaagtcc
acttcctttgacaggatgcaggctgcactccgcaagtttgccgttgacgagtgctcggtg
tcggcgtacatctaccaccggttgctaggccacgaggttgaagatgtggttatgcgatgc
cctctgcccaagcacttctcagcaccccagttgcccgagctgaatcgctcgcaggtttat
gcagtgaagcatgcgctgcagcggccactgtcgctcatccagggtccacctggtacggga
aagactgtaacgtcggccacggttgtgtaccacctggccaaacagagcaccgggcctgtc
ctggtttgtgcacccagcaacattgccgtggaccagctgacggagaaagtacaccagacg
ggcctgcgggtggttcgcttgtgcgccaagagtcgagaggccctgaactcgcccgtctcc
ttcctggcgctgcacaaccagatccgcagcatggatggtcactcggagctgcacaagttg
cagcagctcaaggacgagacgggcgagctgtcgtcggctgacgagaagcgctaccgcatg
ctcaaaaaggcctgtgagcgcgagctcttagaggctgcagatgtcatctgctgtacgtgc
gttggggcaggagaccctcggctcgcgcgcttcaagttccactccatcctcatcgacgag
agcatgcaggccaccgagccggagtgtatggtgcctgttgtgcttggggccaagcagcta
atcctggtgggtgaccattgccagctgggccctgtggtgatgtgcaagaaggcagcacgt
gctgggctttcgcagtcgcttttcgagcggctcgttgtgctgggtatcaggcccttgcgt
ctggaagtgcagtaccgtatgcaccctcagctcgcccagttcccatccaacttcttctac
gagggctccctgcagaatggtgtgtttgccgacgagcgccgcatgcgcggtttggacttc
ccgtggccgcagccggagaggccgatgctcttctacgcctgtcagggccaggaggagatg
gcgggcagtggtacctcttacctgaaccgaactgaggctgcactcgtggagaagatctgc
acacgctttctgcgcagtggcgtcaagccgcagcaggttggcgtcatcacgccttacgag
ggccagcgagcctacctggtgcagcacatgcaattccagggggccctgcatgccaagctt
taccaggaaatagaggtggccagcgtggacgccttccaaggccgagaaaaggatctgatt
gtgatgtcctgcgtacggtccaacgaacaccagggcattggatttctcaacgacccccgt
cggttgaacgtggcgctgacacgggctcgctatggtctcataattgtgggcaaccccaag
gttctatctaagcagcctctctggaaccacctgctgaccttttataaggagaacagggtg
ctggtcgagggccccctgaacaacctcaaggaaagcctgatccagttcagcaagccacgc
aagctggtcaacacggtgaacccgggtggtcacttcatgaacaccaccgtgtttgacgcc
cgtgaggctatggtacccggcagcgtgtacgatcgatcttcccagctgaacggtgggccg
gattggcgaggcaccggccgtggagcctgggcaccccttaaggagaacttcaccgagacc
ggttttggccggcaccacgacccgttggcgtacattggccctgccgagcgggcggcagcc
aatccgggcctgcccgttcctgttgggctgttcatgaacatggcacatgttccaccacgc
ttctacaatcaacaccagcaggcactgcaggcgcggcgaggggctgctggctcagccaag
ggtcccccaccccgccgcacggcccgcaatcagcagcagcagcagccacccccagggcgg
cgggccccgtcaggatcacagttcaacagtcaagctagccagggtgcgctgtcccagccg
ggcggcagtgggcccctgtcgcagcccggaggagtgggtgccttgtcacagctgtcgcag
gagagctgcttcctgggggaggagcttcgctcgcaggccgagggcatgctctcccaggac
tcgtcttaccagggggaccggcactgtttcggacaaccgccgtcctcctccacagcccac
ttcgcagcacagcagccctactga
DBGET
integrated database retrieval system
