Rhipicephalus microplus (southern cattle tick): 119187711
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Entry
119187711 CDS
T07403
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119187711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119187711
03041 Spliceosome [BR:
rmp03041
]
119187711
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119187711
Spliceosome [BR:
rmp03041
]
Complex B
Other components
Prp19-related factors
119187711
Complex C
119187711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
Mad3_BUB1_I
TPR_12
TPR_15
ARM_TT21
RPN7
DHR-2_Lobe_A
TPR_10
PPR
TPR_16
Motif
Other DBs
NCBI-GeneID:
119187711
NCBI-ProteinID:
XP_037291691
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MKSTKDIVFEEDDLPYEEEIIRNPFSVKHWIRYIDYKKDQPKHVINLICERSLRELPGSY
KLWYNYLKLRRQQVRDLCITDPEYEEVNSAFERSLVFMHKMPRIWMDYCKFLTVQQKITR
TRRVFDRALRALPITQHHRIWPLYLEFVNMHDIPETALRVYRRYLKLCPGNAEEFVEYLT
HIGRLDDAAVLLADIVNKEDFVSKEGKSKHQLWNELCEMISKNPDKVHSLKVDAIIRGGL
RRYTDQIGQLWNSLADYYIRAGLFERARDIYEEAIQTVLTVRDFTQVFDAYAQFEESVLC
AKMEETSKTKPSEESDLDLELRLARFEDLMDRRPLLLNSVLLRQNPHNVHEWLKRVKLFE
GKPREIVNTFTEAVQTIDPKLATGKLNVLWVSFAKFYEENDQIEDARIIFEKATQVPFTK
VEDLAYVWCEWAEMELRHENHEGALNLMQRATAMPSRKAAYHDQSEPVQFRVYKSLKVWS
LYADLEESFGTFKSAKAVYDRIIDLKIATPQIIINYGLFLEENNYFEEAFKAYEKGVALF
KWPNVFDIWNTYLTKFLKRYGGTKLERARDLFEQCLEGCPAKFAKALYLLYAKLEEEHGL
ARHAMAIYDRGCKAVLPEEQFEMFNIYILKAAEIYGLTHTREIYERAIELLPDTQARLMC
VRFADLERKLGEIDRARAIYAHCSQMCDPRTTADFWNTWKEFEVHHGNEDTMREMLRIKR
SVQAMYNTQVNFMTAQMLSATARETAAAGGIEDAPIDSMQQLEAAAKLLADEARKDTARM
PGKDILFVRGGTTEDEQSLAERSRTTNPDEISIDDEDGSDDDQQVEEVAVEQRSVPEEVF
GDLKK
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaccaaggatatcgtattcgaggaagatgatcttccgtacgaggaagagatc
attcggaaccctttctccgttaagcactggatacgctacattgactacaagaaagaccaa
ccaaagcatgttatcaacttgatctgcgaaagatctttacgagagcttcccggcagctac
aagctttggtacaactatttgaagttgagaagacagcaagtcagggatctctgcataact
gacccagagtacgaggaagtcaacagtgctttcgagcgatcgttggttttcatgcataag
atgccccgaatatggatggattactgtaagttcctcaccgttcagcagaagattacacgt
actcgacgagtgtttgacagggctcttcgggctttgcctatcactcagcatcatcgcata
tggccgctgtatttagagttcgtcaatatgcacgacattcctgaaacagctcttcgtgtt
tatcgccgctacctcaagctctgccctggcaatgctgaagaattcgtcgaatacttgact
cacattggccgcttagatgatgctgctgtactcctggcagacattgtgaataaggaagac
ttcgtctctaaggagggaaagtctaagcatcagctctggaatgagttgtgtgaaatgatt
tccaagaaccctgataaagtgcactcactaaaagtggacgccattattcgaggcggactg
cgacgttacacagaccaaattggccagctttggaattccttggctgactactatattcgt
gccggattgtttgaaagagcaagggatatatatgaagaagcaatacagactgtgctgact
gttcgggactttactcaggtttttgatgcctacgcccaatttgaagaaagtgttctttgt
gctaaaatggaagaaacaagcaaaacaaagcctagtgaagaaagtgaccttgaccttgaa
ctgcgtctggcacgctttgaggatcttatggatcgaagaccacttctcctgaacagtgtg
ttgctgcgtcagaatccacacaatgttcatgagtggctgaagagggtcaagctttttgaa
ggcaagcctagagagatagtcaacactttcacagaggctgttcaaaccattgatcccaag
ctggccactggtaaactgaatgtcttatgggtgtcatttgccaagttttatgaagaaaat
gaccagattgaagatgctcgaattatttttgaaaaagcaacccaagtaccatttacaaaa
gtggaagaccttgcctatgtgtggtgcgagtgggcagagatggaactgcgacacgaaaac
catgaaggggctcttaatctaatgcagagagccactgctatgccatccaggaaagctgcc
taccatgatcaaagtgagccagttcaatttcgtgtgtataaatctcttaaagtgtggtcc
ctgtatgcagacttggaggaaagttttgggacatttaagtctgcaaaggcagtgtatgac
cggataattgatttgaagattgccacacctcagattatcatcaattatggcctgtttctg
gaagagaacaactattttgaggaagcatttaaggcttatgaaaaaggtgttgcattgttt
aagtggcccaatgtttttgacatctggaacacatacttgaccaagttcctgaaacgttat
ggtggcaccaaactagagcgggctcgggatctttttgagcagtgcctcgaaggttgccca
gcaaaatttgcaaaggctttgtatcttctatatgccaagctggaggaagagcatggtctt
gcacgccatgcaatggccatttatgatcgtggctgcaaagctgtgctgcctgaggaacag
tttgaaatgttcaatatatacatcttgaaagcagctgaaatatatggattgacacacacc
cgtgaaatctacgaacgtgccattgagcttctgccagacacccaggctcgactcatgtgc
gtgcgctttgctgaccttgagcgcaagttgggcgaaattgaccgtgctcgagccatatat
gcacactgcagtcaaatgtgtgatccacggacaacagctgacttctggaacacatggaag
gagtttgaggtgcaccatggaaatgaggacaccatgagagaaatgctaagaattaagcgc
agtgtacaggccatgtataacacccaggtcaacttcatgacagctcagatgctgagtgca
actgccagggagacagcagctgcaggaggcattgaagacgctccaatagactctatgcag
cagttggaagcagctgctaagttgttggctgatgaggcaaggaaagacactgcaagaatg
cctgggaaggacatactttttgtcaggggtggcactacggaagatgagcagagcttagca
gaacgaagccgtactacaaacccagatgaaatcagcatagatgatgaagatggctccgat
gatgaccaacaagttgaagaggtggctgtggaacaaagatctgttccagaagaagtcttt
ggcgatctcaaaaaataa
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