Rhodothermus marinus DSM 4252: Rmar_0398
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Entry
Rmar_0398 CDS
T01119
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03420
Nucleotide excision repair
rmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmar_0398
03430 Mismatch repair
Rmar_0398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_0398
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmar_0398
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmar_0398
MMR (mismatch excision repair)
Other MMR factors
Rmar_0398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
Viral_helicase1
DEAD
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACY47302
UniProt:
D0ME78
LinkDB
All DBs
Position
441587..443893
Genome browser
AA seq
768 aa
AA seq
DB search
MRTFLLQPDPNAENETPEPLPEAAARILEGLNPVQRQAVQVTEGPVLIIAGPGSGKTRTL
THRIAYLIATGRARPHQILALTFTNKAAREMMERIERLVGAEAARHIWMGTFHAIFARIL
RREGHRIGYTPDFSIYDTDDSERLLRELMARYHIDPRQYSPRTIRHLISGAKNQMIGPEE
YARLVASPVQEKAAKLYGPYQEALRKANALDFDDLLLKPIELFEQHPDVLQRYQERWRYL
HIDEYQDTNRAQYVLARKLAAAHRNLCVVGDDAQSIYAFRGADIGNILSFQRDYPDATVI
RLEQNYRSTRRILKLAEAIIQHNRDQLEKRLWTENPEGDPIVLIEALSERDEAQKVEQRI
RDLHVRYGYAFRDFAVLYRTNAQSRSLEEALRRGGIPYRVVGGLSFYQRKEIKDVLAYLR
LLVNPHDAASLQRVINYPARGIGQRTIEVLADYARQHGLSLWQAIERVEEVGLPTRAQKA
VQEFHFLIARHAAKMDAMPVDELARSLLQESGLLEELRREGTPEALARWENVQELLNAIA
EYVATAGEQATLSGFLQEVALLTDLDEMPEDNRVTLMTLHASKGLEFPVVFITGLEEGLF
PLAQATQDRKDLEEERRLFYVGVTRAQRHLFLCYARSRYRYGEQQPSVRSRFLEELDTDV
IVTEAGLPFRRGEVLDRRPRSERYVEMDPHYYRRPLQQRRSSGATRRVVYDEGAGEIVPG
ARVEHAIFGEGKVLALEGQGDQARAIVFFPEVGQKKLVLKFARLRRID
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacgtttctgctccaacccgacccgaatgctgaaaacgagacgcccgagccgttg
cccgaagccgctgcgcgcattctggaggggctcaaccccgtgcagcggcaggccgtgcag
gtgaccgaagggcccgtgctgatcattgccggaccgggctcgggcaagacgcgcacgctc
acgcatcggatcgcctacctgatcgccaccggacgggcccggccgcatcagattctggct
ttgaccttcacgaacaaggcggcccgtgaaatgatggagcggatcgagcgcctggtgggc
gccgaggccgcccggcacatctggatgggcaccttccacgcgatcttcgcccgtatcctg
cgccgcgaagggcaccgcatcggctacaccccggacttcagcatctacgacacggacgac
tcggagcggctgctgcgcgaactgatggcgcgttaccatatcgatccgcgccagtacagc
ccgcgcacgatccgccacctgatctccggtgccaaaaaccagatgatcgggccggaggaa
tacgcccgtctggtggcgtcgcccgtgcaggaaaaagccgcgaagctctacggcccctat
caggaggcgctgcgcaaagccaacgcgctcgacttcgacgacctgctgctcaagcccatc
gaattgttcgagcagcatcccgacgtgctgcagcgctaccaggagcgctggcgctatttg
cacatcgacgagtaccaggacacgaaccgggcgcagtacgtgctggcgcgcaagctggcc
gcggcgcaccgcaacctgtgcgtggtgggcgacgacgcccagtcgatctacgccttccgg
ggggccgacatcggtaacatcctgtcgttccagcgcgactacccggacgccacggtcatc
cggctggagcagaactaccgctccacgcgccgcatcctgaagctggccgaggcgatcatc
cagcacaaccgggatcagctcgaaaaacggctctggaccgaaaacccggaaggcgacccg
atcgtgctcatcgaggcgctttcggagcgcgacgaggcccagaaggtggagcaacgcatc
cgggacctgcacgtgcgctacggctacgccttccgcgattttgccgtgctctaccgcacg
aacgcccagagccgttcgctcgaagaggcgcttcggcgtggcggcattccctaccgtgtg
gtgggcgggctgtcgttctaccagcgcaaggaaatcaaagacgtgctggcctacctgcgc
ctgctggtcaacccgcacgacgcggccagcctccagcgcgtgatcaactacccggcgcgc
ggcatcggtcagcgtacgatcgaagtgctggccgattatgcccggcagcacggactgagc
ctgtggcaggccatcgaacgcgtggaggaggtcgggctcccgacccgcgcgcagaaggcc
gtgcaggaattccactttctgatcgcccgccatgcggcgaagatggacgccatgccggtg
gacgagctggcccgctcgctgctgcaggagagcggtctgctggaggagttgcgccgtgaa
ggcacccccgaggcgctggcgcgctgggagaacgtgcaggagctgctgaacgccatcgcc
gagtacgtggccacggccggtgagcaggccacgctgagcggctttctgcaggaggtggca
ctgctgaccgatctggacgaaatgcccgaggacaaccgcgtcacgctcatgacgctgcac
gcctcgaaagggctggaatttcccgtggtgttcatcaccggcctggaggaggggcttttc
ccgctggcgcaggccacgcaggaccgcaaggacctggaggaagagcgacggctgttttac
gtgggcgtgacgcgggcgcagcggcacctgtttctctgctatgcccgcagccgctatcgc
tatggcgagcagcaacccagcgtccgcagccgctttctggaagagctcgatacggatgtg
atcgtgaccgaagccgggcttcccttccgtcgcggtgaggtgctggaccgtcgtccccgg
agcgagcggtacgtggaaatggatccgcactactaccgccggccgttgcagcagcgacgc
agctccggcgcgacgcggcgcgtggtgtacgacgaaggcgccggcgagatcgtccccggc
gcccgcgtggagcatgccatcttcggcgaaggcaaggtgctggcgctggaggggcagggc
gatcaggcccgggccatcgtcttcttccccgaagtgggccagaagaagctcgtgctcaaa
tttgcccgccttcgtcggatcgattga
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