Rhodothermus marinus DSM 4252: Rmar_0453
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Entry
Rmar_0453 CDS
T01119
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03420
Nucleotide excision repair
rmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmar_0453
03430 Mismatch repair
Rmar_0453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_0453
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmar_0453
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmar_0453
MMR (mismatch excision repair)
Other MMR factors
Rmar_0453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
HHH_5
RecR_HhH
Pescadillo_N
Nol11_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
ACY47355
UniProt:
D0MED1
LinkDB
All DBs
Position
496567..498612
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AA seq
681 aa
AA seq
DB search
MARRFVLKPEAEAPTTRLTVDYAGQLNPQQYAVVTAGGGPILVVAGAGTGKTRTLVYRVA
YLVETGTPPEEIVLLTFTRRAAREMLARAAALLDGRCERVQGGTFHAFCLGLLRRYAGRL
GYPSNFTVLDASDAADVIDLLRTAHGLHRSGRRFPRKQTIQAIFSAAASHPDADLETILE
ARYPQFLEHLEALQALREDYACYKRQHGLMDYDDLLACTIELFRQHPDVHRQVAARCRHV
LVDEYQDTNRLQAQIVQALAAVHGNVMAVGDDAQSIYRFRGADFRNIFEFPRLFPGTRIL
KLEQNYRSTQPILDLANRIIRRAHHRYDKVLFSERKQGERPAIVPAPDERTESRFVCQMI
LALREQGVPLHQMAVLFRSSHNAFDLEMELNRRGIPYVKYGGLKLSEAAHVKDLLAYLRL
LENPKDAAAWNRVLQLIEGIGPRTAQRLIEWITSADATPFTLEERPFSPRYAEALIRLFT
LLRQLWETELPLEAQLTELLHYYRPLCERRYYEDYPKRLQDLEHLVSLSARFQSRAAFLE
ALVLDPLELTALEVEPLVEDEPPLVLSTIHSAKGLEFHTVFIIHALEGILPSAYALNDPE
ALDEELRLLYVAVTRAREYLFISYPMVRYQAGSGSYLTSPSRFLEDLPEEILEPWVLVEE
PTASSAYELPDSGASALPPGD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgccgctttgtactgaagccggaagccgaagcccccaccacccgcctgaccgtg
gactatgccggccagctcaacccgcagcagtatgcggtggtgacggccgggggcggaccg
atcctggtggtggccggggccggcacgggcaagacgcgcacgctggtctaccgcgtggcc
tatctggtcgagaccggcacaccgcccgaggaaatcgtgctgctgaccttcacgcgccgc
gccgcccgcgaaatgctggcgcgggccgccgcgctgctcgacggacgctgcgagcgggtc
cagggcggcaccttccacgccttctgcctgggactgctccgacgctatgccggccggctg
ggctacccctcgaacttcaccgtgctggacgcttcggacgccgccgacgtgatcgatctg
ctccgcaccgcacacggattgcatcggagcggccgtcgctttccccgcaaacagacgatc
caggccatcttttcggcggcggccagccaccccgacgccgatctggaaacgatcctggag
gcccgctatccgcagtttctggagcatctcgaagcgttgcaggcgctccgcgaggactat
gcctgctacaagcgccagcatggcctgatggactacgacgacctgctggcctgcacgatc
gaactcttccggcagcaccccgacgtgcatcgccaggtagcggcgcggtgccgccatgtg
ctcgtcgatgagtaccaggacaccaaccgcctgcaggcacagatcgtgcaggcgctggcc
gccgtgcacggcaacgtgatggccgtgggcgacgacgcgcagtcgatctaccgcttccgc
ggtgccgacttccgcaacatcttcgagtttccccggctgtttccgggcacgcgtatcctg
aaactggagcagaactaccgctccacgcagcctattctggatctggccaaccggatcatc
cggcgggcgcaccaccgctacgacaaggtgctcttcagcgagcgcaagcagggcgagcgg
ccggccatcgtcccggcaccggacgagcgcaccgaaagccgcttcgtctgtcagatgatt
ctggcacttcgcgagcagggcgtgccgctgcatcagatggccgtgctgttccggagcagc
cataatgcgttcgatctggaaatggagctcaaccgccggggcatcccctacgtgaagtac
ggcgggctgaagctcagcgaagcggcccatgtaaaggacctgctggcctacctccggctg
ctcgaaaatccgaaagacgcagccgcctggaaccgcgtgctgcaattgatcgaagggatc
ggcccgcgcacggcgcagcgactgatcgaatggatcacgtcggccgacgcgacgccgttc
acgctggaggagcggccgttttcgccgcgctacgccgaggcgctgatccggctcttcacg
ctgctgcgccagctctgggagaccgagcttccgctggaggcgcagctgaccgagctgttg
cactactaccggccgctgtgcgagcgccgttactacgaggactacccgaagcggctgcag
gacctggagcacctggtcagtctgagcgcccgctttcagagccgggcggcgtttctggaa
gcactcgtgctcgatccgctggaactgaccgcgctggaggtcgagccgctcgtcgaagac
gaaccgccgctggtgctctcgacgatccattcggccaagggcctggagttccacacggtg
ttcatcatccacgcgctggaaggcattctgccgtcggcctatgcgctgaacgatccagaa
gcgcttgacgaggagctccggctgctctacgtggccgtcacccgcgcgcgggagtatctg
ttcatttcctatccgatggtgcgttaccaggccggctccggctcgtacctgaccagcccc
agccgctttctggaagacctgccggaagaaattctggagccctgggtgctcgtggaggaa
cccacggcttcttccgcctatgaactgccggattcaggtgcgtccgcgttaccgccaggc
gattga
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