Rhodothermus marinus DSM 4252: Rmar_0504
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Entry
Rmar_0504 CDS
T01119
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rmr
Rhodothermus marinus DSM 4252
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmr03016
]
Rmar_0504
Enzymes [BR:
rmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Rmar_0504
Transfer RNA biogenesis [BR:
rmr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Rmar_0504
Prokaryotic type
tRNA splicing ligases
Rmar_0504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
ScfRs
Motif
Other DBs
NCBI-ProteinID:
ACY47406
UniProt:
D0MEV6
LinkDB
All DBs
Position
564462..567428
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AA seq
988 aa
AA seq
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MAELRFVKIHDYLWEIPRTGGMRVPARIYASEKILRELKEDQAPQQAVNVAHLPGIVKYS
LAMPDIHWGYGFPIGGVAAFDLDEGVISPGGVGYDINCLTGEARVLHAHGYYRTIAEIVE
AGTNDPLCSYRFAVRRPESARIIYRFGETPRTRVWRVWTRGGDTVEATEDHPFWTPQGMV
PLRELRPGDRVAFCPFEGVPYEAPSSETILSPEAFWEALRQLGIPDRGRRYRQLVRYLTR
RGLLPLRYDSPALPLLCKLLGYLLGDGTCYRERNGRIRLVAYGRAEDLEAMRHDLEALGV
RAARLRRRRRRHRVQTVYRPYAFEREEVSLHITSRAFALLLVALGMPIGDRTAQDFEAPA
WLERAPRWQKRLFLAGLFGAELSAPRLMSGHARTFATPVLTLTKRAPFAESGRRFLETLA
RWAAELGVRTQAIEARRELLATGERVRWQWRMASDPASLRALWGRIGYEYNFRRQHEAAC
ALQYVKYKEQVVRQRQEAVRLLRRWRAAGVSVGEATRRLADQDINRRFVERTYYEQRGDT
PRIGDAVCSYAAFRRERQNGQEPLGCVWEEIVRIEPVERPELRVYDLTVDHPDHNFIANG
FVVSNCGVRLLASRLTYEEVEPHLERLVEMLFRRVPTGVGASGALRVSKQELRRVAVEGA
HWAVRHGFGSEVDLEFIEENGRIEGADPAAVSERAYERGADQLGTLGSGNHFLEVGYVAQ
IFDDEAARVMGLFPGQVTVIIHTGSRGFGYQICDDYLAVMDRALARYHIRLPDRQLACAP
LRSPEGQQYLAAMRCGINFAFANRQIIAHNTRKAFAEALGMREEDIGLRTVYEVAHNIAK
IEEHTIDGERRRVCVHRKGATRAFPPGHSQIPAAYRSIGQPVLIPGDMGRYSYVLVGTEQ
AMQETFGSTCHGAGRQLSRTKAKKVASGRHVAEELRARGIIVRGASIRTINEEIPEAYKD
VAEVVEVCHRAGISRKVAQLRPIGCIKG
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcggaattgcgctttgtcaagatccacgactatctctgggagattcccaggacgggc
ggcatgcgggtgcccgcccgcatctacgccagcgaaaagatcctgcgcgaactgaaggag
gatcaggcgccccagcaggccgtcaacgtggcgcatctgccgggcatcgtcaagtactcg
ctggccatgcccgacatccactggggctacggctttcccatcggcggggtggccgcgttc
gatctggacgaaggcgtgatctcgcccggcggtgttggctacgatattaattgccttacc
ggcgaggcacgggtgcttcatgcccatggctactatcgcacgatcgccgaaatcgtcgag
gccggtacgaacgatccgctctgcagctatcggtttgcggtgcgtcggcccgagtcggcc
cggatcatttatcgtttcggggaaacgccgcgtacgcgcgtctggcgcgtctggacccgg
ggcggcgacaccgtggaggctaccgaagaccatccgttctggacgccgcaggggatggtg
ccgctgcgggagctgcgtcccggcgatcgggtagcgttctgtcccttcgaaggcgtgccc
tacgaggccccgtcatccgagaccatcctgagccccgaggctttctgggaagcgctgcgg
caactgggcattcctgatcgcggtcggcgttaccggcagcttgtgcgctatctgacgcgc
cgtggtctattgccgctgcgctacgattcgcctgcgttgccgctcctctgcaagctgctg
ggctatcttctgggcgatggcacctgctaccgggagcgcaacggccgtatccgactggtc
gcctacggtcgcgcggaagatctggaagcgatgcggcatgatctggaggcgctgggagtc
cgtgcggcccgactgcgtcggcgtcgccgtcggcatcgggtgcagacggtttaccgcccc
tatgccttcgagcgcgaagaggtcagcctgcacatcaccagccgggcgtttgcgctcctg
ctggtcgcgctgggcatgccgatcggcgatcggacggcccaggacttcgaagcaccggcc
tggctggagcgagcgccccgctggcagaaacggctgtttctggccgggttgttcggggcc
gagctgtcggccccgcggctcatgagcgggcatgcgcgtacgtttgcgaccccggtgctg
acgctgaccaaacgggcaccgtttgccgaaagcggccgccgtttcctggagacgctggcg
cgctgggcagccgaactgggcgtacgcacgcaggccatcgaagcccgccgggagctgctc
gctaccggcgaacgcgtgcgctggcagtggcggatggcatccgatccggccagcctgcgg
gcgctctggggacgcatcggttacgagtacaacttccgacggcagcacgaggccgcctgc
gcgctgcagtacgtcaagtacaaggagcaggtggtgcggcagcgccaggaggcggtgcgg
ctgctgcgtcgctggagggcggccggcgtgtcggtcggggaagcgacgaggcggctggcc
gatcaggacatcaaccggcgctttgtcgaacgcacctattacgagcagcgcggtgacacg
cctcgcattggcgatgcggtgtgcagctatgcggcatttcgccgggaacggcagaacgga
caggagcctctgggctgcgtctgggaagagatcgtgcgtatcgagccggtggaacggccc
gaacttcgggtgtacgacctgaccgtcgatcatcccgatcacaacttcatcgccaacggc
tttgtggtctccaactgcggcgtgcggctgctggccagccggctgacctacgaggaggtc
gagccgcatctggagcgtctcgttgagatgctcttccggcgcgtgcccaccggcgtaggc
gcctcgggcgcgctcagggtctcgaaacaggagctgcggcgcgtggccgtcgagggcgcg
cactgggccgtgcgccatggattcggttcggaagtcgatctggaattcattgaagaaaac
ggccgtattgaaggggccgatcctgcagccgtctcggagcgcgcctatgagcggggcgcg
gaccagctcggcacgctgggttcgggcaaccacttcctggaggtcggctacgtggcgcag
atcttcgacgacgaggcggcgcgggtcatggggctgttcccggggcaggtgaccgtcatc
attcacaccggatcgcgcggcttcggctaccagatctgcgacgattatctggccgtcatg
gaccgcgcgttggccaggtaccatatccggttgccggatcgccagctcgcctgcgcaccg
ctgcgctcaccggaaggccagcagtatctggccgccatgcgctgcgggatcaacttcgcc
ttcgccaaccgccagatcatcgcgcacaacacgcgcaaggcgttcgccgaggcgctgggc
atgcgcgaagaggacatcgggctgcggacggtctatgaagtggcacacaacatcgccaag
atcgaagagcacacgatcgacggcgagcggcggcgcgtgtgcgtccaccgcaaaggtgca
acgcgggctttcccgccgggccattcccagattccggcggcctaccggagtatcggccag
cccgtgctgattccgggcgacatgggacgctactcctacgtgctggtcggcaccgagcag
gccatgcaggagacgttcggcagcacgtgccacggggccggtcgccagctcagccggacg
aaggccaagaaggtagccagtggccgccacgtggccgaggagttgcgcgcccggggtatc
atcgtgcggggcgctagcatccgcacgatcaacgaggagattcccgaagcctataaagac
gtggccgaggtggtcgaggtgtgccatcgggcgggcatctcccgcaaggtggcgcagctc
cggccgatcggctgtatcaaaggataa
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