Rhodothermus marinus DSM 4252: Rmar_1056
Help
Entry
Rmar_1056 CDS
T01119
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmar_1056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmr03019
]
Rmar_1056
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_1056
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmar_1056
Messenger RNA biogenesis [BR:
rmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmar_1056
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rmar_1056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACY47948
UniProt:
D0MHJ0
LinkDB
All DBs
Position
complement(1204736..1206490)
Genome browser
AA seq
584 aa
AA seq
DB search
MSDAAADRYETARALLRRYWRHDAFRPGQWEIIQAVLQGQDVLAVLPTGAGKSVCYQLPA
LLLDGLTLVVSPLLALIEDQVARLRARGIPAAFLHGHLSTHAAEQCWIDAEHGAYRLLYV
TPEQLTTARFEARAGRLRVALLAVDEAHCVSEWGPQFRPAYLHLPEARRQLGDPPLLALT
ATATPRVRQDIVEKLALRTPRIIVRGFDRPNLVWSVFETADKAERVRAVLRGVPGPGILY
CATRRSAERWTETLRRLGVEAVCYHGGLSAADRAAASRAWREGQARVVAATSAFGMGIDR
ADVRFVLHAELPPSLEAYYQEAGRAGRDGQKAYAVLLFQEKDIDLQRQLIALSYPARDVV
ARIYEVACSLAQVPVGIRPNHPVLFAPERIARIVGVPVGAVRHTLELLTRQEVWEPIWLP
AHYVLLRLRGTPNDFRRFAAATNNPRLARFVEALLRAIPADAFSTWWPVSLRRLSRRTGV
ERERLLRGLDFLRERVLLDWLSSDRARLVRLKIARPQRLSIDDRLLRQAREQAEARLEAL
VRYARTTSCRRHFLLTYFGESAPERCNACDVCLKRSGRRSPSEL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgccgcggccgaccgctacgagaccgcccgcgcgctgctccgccgctactgg
cgacacgacgcgtttcgtccgggccagtgggagatcatccaggcggtgctgcagggacag
gacgtgctggccgtgctcccgaccggcgccgggaagtcggtctgctaccagctcccggcc
ctgctgctggacggcctgacgctggtcgtctcgccgctgcttgcgctcatcgaagaccag
gtggcccggctccgggcgcggggcatcccggccgcctttctgcacggacatctctcgacg
cacgcggccgagcagtgctggatcgatgcggagcacggcgcctatcggttgctttatgta
acccctgaacagctcaccaccgcccgcttcgaagcacgggccgggcggctgcgcgtggcg
ctgctggccgtcgacgaagcgcactgcgtcagcgaatggggtccgcaattccgtcccgcc
tacctgcacctgcccgaggcccgtcggcagctgggcgatccgccgctgctggcgctcacg
gccacagccaccccgcgcgtgcgtcaggacatcgtcgaaaaactggcgctgcgcaccccc
cggatcatcgtgcgcggcttcgaccggcccaacctggtctggtccgtgttcgagaccgcc
gacaaagcggaacgcgtccgagccgtactccggggcgtgcccggcccgggcatcctgtac
tgcgccacgcggcgaagcgccgaacgctggaccgaaacgctgcggcggctgggcgtcgag
gcggtctgctaccatggcggactgtcggcggccgaccgggcggccgcctcccgggcctgg
cgggagggacaggcccgcgtcgtagccgccaccagcgccttcggcatgggcatcgaccgg
gcggacgtccgcttcgttctgcacgccgaactcccgccatcgctcgaagcctactaccag
gaggccggtcgggccggacgcgacggccagaaagcctacgccgtgctgctctttcaggag
aaagacatcgacctgcagcgccagttgatcgccctgagctatccggcgcgcgacgtggtg
gcccgcatctacgaggtggcctgcagcctggcccaggtgcccgtgggcatccgtccgaac
catcccgtgctgttcgctcccgaacgcatcgcccgcatcgtgggcgtcccggtgggtgcc
gtgcgccacacgctggagctgctcacgcgccaggaagtctgggagccgatctggctaccc
gcccattacgtgctgctgcgcctgcgcggcacaccgaacgactttcgacgctttgcggca
gccacgaacaacccgcggctggcccgcttcgtcgaagcgctgctgcgtgcgatcccggcc
gacgccttttccacctggtggccggtcagcctgcgccggctgagccgccgcaccggggtg
gagcgcgagcggctgctccgcggcctggattttctgcgggagcgtgtgttgctcgactgg
ctctcgtccgaccgcgcccgcctggtccgcctcaaaatcgcccgccctcagcgcctgagc
atcgacgaccgcctgctgcggcaggcccgcgagcaggccgaagcgcgcctggaagcactc
gtccgctacgcccgcaccacgagctgccgccgccactttctgctgacctacttcggcgaa
tcggcgcccgagcggtgcaacgcctgcgacgtgtgcctgaagcgatccgggcgccggagc
ccctccgagctgtag
DBGET
integrated database retrieval system
