Rhodothermus marinus DSM 4252: Rmar_1349
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Entry
Rmar_1349 CDS
T01119
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03030
DNA replication
rmr03410
Base excision repair
rmr03420
Nucleotide excision repair
rmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rmar_1349
03410 Base excision repair
Rmar_1349
03420 Nucleotide excision repair
Rmar_1349
03440 Homologous recombination
Rmar_1349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmr03032
]
Rmar_1349
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_1349
Enzymes [BR:
rmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rmar_1349
DNA replication proteins [BR:
rmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rmar_1349
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rmar_1349
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmar_1349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACY48238
UniProt:
D0MID0
LinkDB
All DBs
Position
complement(1581139..1583913)
Genome browser
AA seq
924 aa
AA seq
DB search
MQRLYLIDAMALAYRAHYVFISRPLVNSKGQNTSAAYGFTTSLLKLIEEHGMDYMAVVFD
AGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTL
ARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLEPHQFI
DVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNHREEA
LLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAGIVNGE
AALDEALEAEGEPEFDFGPYEPLQVYDPEKADYRIVRNRQQLDELVARLDGLERLAIDTE
TTSTEAMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLAPILRRAQRKVGQNLKY
DLVVLAQHGVEVPPPYFDTMVAHYLIAPEEPHNLDVLARQYLRYQMVAITELIGSGRDQK
SMRDVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGI
CIDRTVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTG
RPSTKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTA
TGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRR
AFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQ
ELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVN
MPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMK
QALPLEGVPIEVDIGVGDNWLDAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcctgtacctgatcgatgccatggcgctggcctatcgggcgcactacgtgttc
atcagccggccgcttgtcaactcgaagggacagaacacctcggccgcctacggttttacg
acctcccttctgaagctgatcgaagaacacggcatggactacatggccgtggtcttcgac
gccggcggggaggagggcacgtttcgcgaagcgatctatgaggaatacaaggcgcatcgg
gagccgccgccggaagatctgctggccaacctgccctggatcaaggagatcgtccgggcg
ctggacattcccgtcatcgaggagccgggcgtcgaggccgacgacgtgatcggcacgctg
gcccgtcgggccgaggcgcacggcatcgacgtagtgatcgtctcgcctgacaaagacttt
ctgcaactgctgagcccacgcatttccatctacaaaccggcgcggcgcggcgaaaccttc
gacctgatcaccatcgagaccttccgggagacctacggcctggagccgcaccagttcatc
gacgtgctggctctcatgggcgatccgagcgacaatgtgccgggcgtgccgggcatcggc
gaaaagaccgccgtgcagctcattcagcagtacggctcggtggaaaacctgctggcgcat
gccgaagaggtgaaagggaagcgggcccgcgaggggctgctgaaccaccgcgaggaagcg
ctcctctcgaagcgactggtgacgatccggaccgatgtgccgttgcgcattcgctgggag
gcgttccatcgcgcccggcccgatctgccgcgcctgctgcagatctttcaggagctggaa
ttcgactcgctggtgcggcgcatccgggaaggcggactggccggcattgtgaacggcgaa
gccgccttggatgaggcgcttgaagcggagggcgagccggagttcgacttcgggccctac
gagccgctgcaggtgtacgatccggaaaaggcggactaccggatcgtccgcaaccgccag
cagctcgacgaactcgtggcgcggctggacggactcgaacggctggccatcgacacggag
acgacttcgaccgaggccatgtgggcctcgctggtgggcattgccttttcctgggagaaa
ggccagggctactacgtgcccacgccgctgccggacggcacgccgaccgagacggtgctc
gagcgactggcgccgatcctccgacgggcgcagcgcaaagtcggtcagaacctgaagtac
gatctggtggtgctggcgcagcacggcgtcgaagtcccgcccccgtacttcgacacgatg
gtggcgcactacctgattgcgcccgaggaaccgcataacctggacgtgctggcccgccag
taccttcgctaccagatggttgccatcacggaactgatcggctcgggtcgcgaccagaag
tccatgcgcgacgtgtcgatcgacgaggtggggccctatgcctgtgaagacacggacatt
gcactgcaactggccgatgtgctggccgccgagctggaccgacacggactccggcatatc
gccgaggagatggagtttccgctcatcgaggtgctggccgatatggagcggacgggcatc
tgcatcgatcgcacggtgctccgggaaatcggtaagcaactcgaagcggagcttcacgaa
ctggaggcgaagatctatgaggtggccggcgtcgaattcaacatcggctcgccgcagcaa
ctggcggacgtcttattcaagaagctcgggttgaagccgcgggcgcgtaccagtaccggc
cggccttccaccaaagagagcgtgctgcaggagctggccacgcagcacccgctccccggc
ctgattctggactggcgacacctggccaagctcaaaagcacctacgtggacggcctcgag
ccgctcatccatccggagaccggccgcatccacaccacgttcaaccagacggtgacggct
accgggcggctttcctcgagcaacccgaacctgcagaacatcccggttcgcaccgagatg
gggcgggagatccgcagggcgtttgtgccgcgaccgggctggaagctgctctcggccgac
tacgtccagatcgaacttcgcattctggccgcgttgagcggcgacgaggcgcttcgccgg
gcctttctggagggacaggacatccatacggccacggcagcccgcgtcttcaaggtgccg
cccgagcaggtgacgcccgagcagcgccgccgtgccaagatggtcaactacggcattccc
tacgggatttcggcctgggggctggcgcagcggcttcgctgctccacgcgcgaggcgcag
gagcttatcgaagaatatcagcgggcctttccgggcgtgacgcgctacctgcaccgcgtc
gtcgaagaggcccgccagaagggctacgtcgagacgctgctgggccgccgccgctacgta
ccgaacatcaactcccgcaaccgggccgagcgctcgatggccgaacgcatcgccgtgaac
atgcccatccagggcacgcaggccgacatgatcaagctggccatggtgcacatctatcac
cgactgcagcgggagggctatcgggccaagatgctgctccaggtgcacgacgagctggtc
ttcgagatgcctcccgaagaggtggagcccgtgcgccaactggtcgagcaagagatgaag
caggccctgccgctggaaggtgtgcccatcgaggtggacatcggcgtcggcgacaactgg
ctggatgcccactga
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