Rhodothermus marinus DSM 4252: Rmar_1876
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Entry
Rmar_1876 CDS
T01119
Name
(GenBank) D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr00550
Peptidoglycan biosynthesis
rmr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rmar_1876
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rmr01002
]
Rmar_1876
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rmr01011
]
Rmar_1876
Enzymes [BR:
rmr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Rmar_1876
Peptidases and inhibitors [BR:
rmr01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
Rmar_1876
Peptidoglycan biosynthesis and degradation proteins [BR:
rmr01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
Rmar_1876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
ACY48759
UniProt:
D0MJV1
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All DBs
Position
2195134..2196627
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AA seq
497 aa
AA seq
DB search
MRLRIWPILLLLWTVPAPVHAQSPRTLQATLDRVLDDPAYESAFWGALVLDLRDSTVLYA
RHARQNFTPASVTKLFITAAALEQLGPDFRYVTRLLADGPVVDGVLQGNLIVRGAGDPAI
GGRFTDGDRTATFRAWADSLRRRGIHRIAGDLIGDDNYFDDTPLGTGWSWDDLTYWYAAE
ISALSFNDNCVDVTIEARRPGEPGRLTWEPPTTYVTLINQTYTIPAGQQLKEGYRRLPGT
NTIVLFSRVPEGRRDTESLTVHNPTRYFVHVLREVLLAEGIAVEGQPVDVDEFSIKPDYT
APNLWTVATYTSPPLSEIVRVINRRSQNLYAEMLLRTLGAERPVPDSTLTPGSAEMGLAA
AARTWLRAGIDTSRIQFVDGSGLSAQNLVSPEATVRLLAYMAAHPDRAVWRAFYASLPTG
GEEATTLQNRFRAGRARGNVRAKTGTISNTSALAGYVRTADGRLLAFAIFCNHYTVPTRQ
VRRTIDAFVEHLARYRN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcgcatctggccgatcctgctgttgctgtggaccgtgccggcgccggtccat
gcccagtcgccccggacgctgcaggcgacgctggatcgggtgcttgacgatccagcctac
gagtcggccttctggggcgcgctcgtactggacctgcgcgacagcaccgtgctctacgcc
cgccacgcccgccagaacttcaccccggcctccgtcaccaaactgttcatcacggcggcg
gcgctggagcaactcggccccgacttccgctacgtgacccgcctgctggccgacggtccc
gtcgtggacggcgtgcttcagggcaacctgatcgtccgtggcgcgggcgaccctgccatc
ggcggccgcttcaccgacggggaccgcacggccacgtttcgcgcctgggccgactcgctg
cgccgccggggcatccaccggatcgccggcgacctcatcggcgacgacaactacttcgac
gacacgccgctgggaacgggctggagctgggacgatctgacctactggtatgccgccgag
atcagcgcgctgtcgttcaacgacaactgcgtggacgtcacgatcgaagcgcgccgcccg
ggcgaaccgggccgcctgacgtgggagccccccaccacctacgtcacgctgatcaatcag
acctacacaattcccgccggacagcagctgaaagaaggctatcgccgcctgcccggcacc
aacacgatcgtgctcttcagccgcgtgcccgaaggccgccgcgacaccgagtcgctcacg
gtccataacccgacgcgctacttcgtgcacgtactgcgtgaggtgctgctggccgaaggc
atcgccgtcgaaggacaacccgtggacgtggacgaattttcgatcaaacccgactacacc
gctccgaacctgtggacggtagccacctacacctcgccgccgctttcggaaatcgtccgg
gtcatcaaccggcggagccagaacctctacgccgaaatgctgttgcgcacgctgggcgcc
gagcgaccggtgcccgacagcacgctcacgcccggctcggccgaaatgggcctggcggcg
gccgcccgcacctggctccgcgccggcatcgacaccagtcggattcagttcgtggacggc
tccggcctctcggcccagaacctggtctcgcccgaggccaccgtacgcctgctggcctac
atggccgcccatcccgatcgcgcggtctggcgagcgttctacgcgtcgctccccaccggc
ggcgaagaagcgactacattgcagaatcgattccgtgccggacgcgcccgtggcaacgtc
cgcgccaagaccggcacgatctcgaacacgagcgccctggcgggatacgtgcgcaccgcc
gacggccgcctgctcgcctttgccatcttctgtaatcactataccgtccccacccgtcag
gtccgtcgcaccatcgacgccttcgtcgagcacctggcccgctaccgcaactga
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