Rhodothermus marinus DSM 4252: Rmar_1917
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Entry
Rmar_1917 CDS
T01119
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03030
DNA replication
rmr03430
Mismatch repair
rmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rmar_1917
03430 Mismatch repair
Rmar_1917
03440 Homologous recombination
Rmar_1917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmr03032
]
Rmar_1917
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_1917
Enzymes [BR:
rmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rmar_1917
DNA replication proteins [BR:
rmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rmar_1917
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rmar_1917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
Intein_splicing
LAGLIDADG_3
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACY48800
UniProt:
D0MJZ2
LinkDB
All DBs
Position
2237059..2241882
Genome browser
AA seq
1607 aa
AA seq
DB search
MHRFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGI
QPIIGCEFYLTPTSRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYLEGYYYKPRIDHE
LLTQYHEGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDHGLPEQK
KINAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRFDNDQFY
LKSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEYNGDMDA
YLRDLVFEGARRRYGDPLPHEVAERLEHELAIIKKMGFAGYFLIVQDFTTAARRLGVRVG
PGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDIDFDDRGRGKVIDYVV
QKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPDGPKVTLAQAYEEVP
ELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVSDYVPVAVAKGKDNDT
VTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKENHGIEIDLDQIPLDDPKTFELF
QRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYRPGPMDLIPNYIARKHGLEPVE
YPHPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQADLLRRCVAEGTLIVDARTGRRV
PVEEVQPGMEVWSLGPDLRLHRVPVQARFDNGIQTVYKVRTRTGRTIELTAEHPLLTLQG
WKHLCDLKVGDAIAVPISLATEGDLSPDPARVKLLAYLLGDGNTVHRTPRGDAPTARFFT
SSPALRNDFLNAVQTLGGQVRIYKHPITGVETIYCTAPKGQADPVLTLIREVGLIGRAHE
KRVPEEVFRYTQAALRLFLGRLWSTDGSIEKKRLSYCSTSMELIEDIAHLLLRLGINTIR
RQRTTTHRPAFELVITDQRDIVLFARQIGPYLVGDKKKRLKALVRQALQRVRNQSIYLIP
AEVGHLVRAAKVKSGLSWTHAGARVGVPGTSLSAGLNLKTPRRALSRHRTALLGRAFADE
TLLALSEGEVLWDPIVEITPVGRKRVYDLAVPPFANFVAQDIVVHNSMGKKKVEEMKKHR
EIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSIVAYQTAYLKANYPAEFMA
AAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVEDGRIRFGLGAIKGVGLGA
IEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGALDELEGHRAQLVEAIDLA
VQYAQKVQADRMAGQASLFGESGTRTALPPPNLPVVQPWSRARCLKEERELIGFYVTGHP
LEAYRAEVNAFATTTLAELSRTLEEADMPRNGSTNGHTNGTTNGHAYRPARPRHRICGII
TEVQRRIGRNGRPLAFASIEDFTGQGELVIFSSVLERVMPYLEVDAVVLVEGQVEVRGGS
VKVLVDELWPMWKVRDELVEALVVQLDLEQVRPEQLDRFHALCREHAGRCKLYFDLLSPD
FPGGRQRLLSRRCLVELNDTLMQQTLRLFGAEAIRLESRRLSAPVRS
NT seq
4824 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgcttcagccatctgcactgccacacccagtattcgctccttgacggtgccgcc
cgcattcagacgctgctggaacgggcggccgaatacgagatcgaagccgtcgccatcacc
gaccacggcaatctgttcggcgtgccggagttttaccgcaccgccgaaaagatcggcatc
cagccaatcatcggctgcgagttttacctgacgcccaccagtcgccacgatcgcaacgag
cgcacccgctaccatcaggtgctgctcgccaaaaacgaaacgggctaccgcaacctgatc
aagctctcctcgctctcctacctggaaggctactattacaaaccgcgcatcgaccacgag
ctgctgacgcaataccacgaagggctgatcgccaccacctgctgcctgcagggcgagatt
ccgcagacgatcctgcacaaaggcgaagaggccgcccgtaaacttttcgagtggtatctg
gagctgttcggcgaggactattacatcgagattcaggatcacgggctgcccgagcagaag
aagatcaatgccattctgctccggtgggcccgtgagtacggcgtcagggtgatcgcgaca
aacgacgtgcactacgtcgatcgcaccgacttcgaaccgcacgacgtgctgctctgcctg
cagacgggcaaggacatgtcggatccgagccggctgcgcttcgacaacgaccagttctac
ctgaaaagtccggccgagatgcgccaggcgctgctgtccgacatcgagccgcgcctggtc
gacgagatgatggccaacaccggcgaggtggccgacaaatgccgcttccagcttcccacc
ggcaagctgctcatgccgcattacccgatcccgcccgagtacaacggcgacatggacgcc
tacctgcgggatctggtcttcgagggggcccgccgtcgctacggcgatccgcttccgcac
gaagtggccgagcgcctggagcacgagctggccatcatcaaaaagatgggctttgccggc
tacttcctgatcgtgcaggacttcaccacggctgcccgacggctcggcgtgcgcgtcggt
cccggacgcggttcggcggccggtagcgccgtggcctactgcctgggcatcacgaacatc
gacccgctcaagtacgacctgctcttcgagcgcttcctgaaccccgagcgcgtctcgatg
cccgacatcgacatcgacttcgacgaccgcggccgcggcaaggtcatcgactacgtcgtg
cagaagtacggccgggagaacgtctgccagatcatcaccttcggcacgatgggcgccaag
atggccattcgcgacgtggcccgcgtgctggggatcccgctggccgaagccgaccgcatc
gccaagctcatccccgacggccccaaggtcacgctggcccaggcctacgaagaggtgccc
gaactccgcgccctcaaggaaagcaacgatccgcagatccgcaaactgctccactatgcc
gaggtgctcgaaggctcggtgcgccacaccggcgtgcatgcggccggggtcatcatcgcg
cccggccgcgtgagcgactacgtgcccgtggccgtcgccaagggcaaagacaacgacacg
gtcaccacccagtacgacggcaagtggatcgaggagttcgggcttctcaaaatggacttc
ctggggctgaagacgcttaccatcctgaacgacgcgcttcagctcatcaaagaaaaccac
ggcatcgagatcgacctggatcagattccactcgacgatccgaagacgttcgagctgttc
cagcggggcgagacggtcgccatcttccagtttgaatccgagggcatgcgcgagtggctg
cgcaagctcaagcccacgtcgatcgacgacctgatcgcgatgaacgcgctctaccggccg
ggccccatggatctgatccccaactacatcgcccgcaagcacggtctggagcccgtcgag
tacccccatcctctgctcgaacccgtcctgaagaacacctacggcattcccatctatcag
gagcaggtcatgcaaatggctcaggtaatggccggctatacgctcggacaggccgacctg
ctacgccgctgcgttgctgaaggtacccttatcgtagatgcccgcaccggccgccgcgtc
cctgtggaagaagtccagcccggcatggaagtctggtcgctgggccccgacctccgcctg
caccgcgttcctgtacaggcccgatttgacaacggaatacagaccgtttacaaagtccgg
acgcgcacaggtcgcaccatcgaactaaccgccgaacacccactactgacgctgcagggc
tggaagcatttgtgcgatttgaaagtgggcgacgcgatcgccgttccgatttcccttgct
acagaaggcgatctctcccctgatccagcccgcgttaaacttctggcctacctgctgggc
gatggcaacacggtacatcgcacaccccgcggcgacgccccgaccgcccgtttcttcacc
tcctcgccggcacttcgcaacgactttctgaatgcagtccagacgctgggaggacaggtt
cgcatttacaagcacccgatcaccggcgtcgagacgatctactgcaccgctccgaaagga
caggcggaccctgtgctcacgttaattcgcgaagttggtctgatcggacgtgcccatgaa
aagcgcgtccccgaggaggtctttcgctacacgcaggccgccttgcgtcttttcctgggc
cgtctctggagtacggatggttctattgagaaaaaacgcctgtcttattgctccaccagt
atggagttgatcgaggatattgctcatctacttcttcgactgggcatcaacacaatacgc
cgtcagcgcactaccacccatcgtcccgcctttgaactggttattaccgatcagcgcgac
atcgttctatttgctcgccagattggcccttaccttgtcggggacaaaaagaaacgcctg
aaggcactcgtccggcaagcgctgcaacgcgtgcgcaatcaatcgatttatctgattcca
gcagaagtcggtcatttggttcgtgcggcaaaagttaaaagtggactgagctggacacat
gccggagctcgggtcggggtgcccggcacttcgctatcggccggattgaatctgaaaaca
ccacgccgagctctctctcgccaccgaacggcgctgctcggacgagcctttgctgatgaa
actttactggccctttccgagggtgaggtgctctgggatcccatcgttgaaatcacccca
gttggacgcaaacgcgtgtacgatcttgccgtgccgcccttcgccaacttcgttgcccag
gacattgttgtgcacaactccatgggcaagaagaaggtagaggaaatgaaaaagcatcgg
gaaatctttgtagccggtgcggccgagcgaggcgttgacgcggaaacggccaatgcggtc
ttcgacatgatggagaagttcgccgggtacgggttcaacaagtcgcactcggcggcctat
tccatcgtggcctatcagacggcctatctgaaggccaactacccggccgagttcatggcg
gcggcgatgaccagcgaaatgggcgacacgaagaagctggccgtggtgctcgacgaagcc
cgccgcatgggcctggagctgctgccgccttcgatcaaccggagccaggcacacttcacc
gtcgaagacggccgcattcgcttcggcctgggcgccatcaaaggcgtgggcctgggtgcc
atcgaggccattctcaaagcccgcgaaaagcacggcccgtttcgcaccattttcgacctg
atacgtcacctggacctgcgcgtcgtcaacaaaaaggtgctcgagtcgctggcgcgtgcc
ggtgcgctcgacgagctggaaggacaccgggcccagctcgtcgaggcgatcgacctggcc
gtccagtacgcgcagaaggtacaggctgaccggatggccggacaggcctcgctcttcggc
gaaagcggcacgcgcacggccctgccgccgcccaatctgccggtggtgcagccctggtcg
cgtgcccgctgcctgaaggaggagcgcgagctgatcggcttttacgtgacggggcacccg
ctcgaagcctatcgcgccgaggtcaacgcctttgccaccaccacgctggccgagctgtcg
cgcacgctggaggaggcggacatgcctcgcaacggatcgaccaacggacacacaaacggc
acaacgaacggccatgcgtaccgtccggcccgtccccgtcatcgcatctgcggtatcatc
accgaagtgcagcggcgcatagggcgcaacggccggccgctcgcctttgcctcgatcgaa
gacttcaccggtcagggcgagctggtcatcttttcctcggtgctggaacgcgtcatgccc
tatctggaagtggacgccgttgtgctcgtcgagggccaggtcgaggtgcgcggcggcagc
gtcaaggtgctggtggacgaactgtggcccatgtggaaggtgcgcgacgagctggtcgag
gcgctggtggtgcagctcgatctggagcaagtgcggcccgagcagctcgaccgcttccac
gcgctctgccgcgagcatgccggccgctgcaagctgtacttcgacctgctcagccccgac
tttccgggcggccgccagcgattgctgagccgacgctgcctggtcgagctcaacgatacg
ctgatgcaacagacgctgcgcctcttcggcgccgaggcgattcgcctggaaagccgccgc
ctgtcggccccggtgcgttcatga
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integrated database retrieval system
