Rhodothermus marinus DSM 4252: Rmar_2052
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Entry
Rmar_2052 CDS
T01119
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Rmar_2052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_2052
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmar_2052
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Rmar_2052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
PriA_C
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_30
PIF1
AAA_16
TrwB_AAD_bind
MarR_2
AAA_19
T2SSE
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ACY48933
UniProt:
D0MD21
LinkDB
All DBs
Position
2387198..2389684
Genome browser
AA seq
828 aa
AA seq
DB search
MTAPPDIVQVALPLPLLQVFSYRVPPEWREAVRPGCRVLVPFGRRHLTGVVVPELPPDPL
PSPLKPILDVLDDTPALTDELLRLTRWMADYYVCGWGEVIRAALPPGLEIESRRRLYPGH
PPAEPPGERAAAVLRFVAEHPGTTIRRLRQELRFASYALLHRLVARGWLQLEESLEAPRV
QIKKEQHVRFAPAYRTPAAQEAVLEKLRGARQRALVTALQALRLEGVAEPTRAELLARAD
ASPATLRRLVELGVLELVEKEVIRSPLEAEPVPKAAPVTFHPEQQAALDRITEAIEARRF
ETFLLHGVTGSGKTEVYIAALKRVRAQGRTGIILVPEIALTPQTVRRFRAHFGDEVAVLH
SRMSDGERYDTWRQLRAGRYPIVIGPRSAVLAPLENLGLIVVDEEHERSYKQFDPAPRYH
ARDVAVYRAYLNGAVCVLGSATPSLESYLNARSGKYTLLEMRRRAPAVGHTPARLPSVRL
VDLRHTRLVNGNPLAPPLARAIAQRLERGEQVILLQNRRGFAPVLECAECGWSPHCPHCS
VTLTYHKVQHQLRCHYCGYATRHPGTCRQCGAAALEPLGIGTQRVEEALRALFPEARVLR
MDLDTTRGRRAHHRLLDRFARGEADILLGTQMVAKGLDFPRVTLVGVVNADTGLLLPDFR
ADEHTFQLLMQVAGRAGRADRPGEVLLQTRNPDHRVFRYLLRHDYAGLARELLAERHQLG
YPPYARLAVLECSGPDEARVAELARSWTEHFQQVCHQHAGGHLIDTLGPTPALHERLKGR
YRYHVLVKVPRRTGAPPLQPLLRQALETFPPLPRAYRLTLDIDPAGLS
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgacggctccgcccgacatcgtgcaggtcgcgctgcccctgccattgctgcaggtcttt
tcctaccgggttcccccggaatggcgggaagccgtgcgaccgggctgccgggtgctggtc
cctttcggccgacgacacctgaccggcgtggtggtgcccgaactgccgcccgatccgctc
ccttcgccgctcaagcccatcctggacgtcctcgacgacaccccggcgctgaccgacgag
ctgctccggctgacgcgctggatggccgactactacgtgtgcggctggggcgaggtcatc
cgcgccgcgctgcctcccgggctcgaaatcgaaagccgccgccgcctgtatcccggccat
ccgccggcggagccgcccggcgagcgcgcggcggccgtgctccgcttcgtggccgaacac
ccgggcaccacgatccgccgcctgcgccaggagctgcgcttcgcttcctacgccctgctg
caccggctggtcgccagaggctggctccagctcgaagaatcgctcgaagccccgcgcgtc
cagatcaaaaaggaacagcacgtacgctttgcgccggcctaccggacgcccgccgcccag
gaagcggtgctggagaagctacggggtgcccgtcagcgggcgctcgtcacggccctgcag
gcgctgcggctggagggcgtcgccgagcccacccgggccgaactgcttgcccgcgccgac
gcttcgccggccacgttgcgccggctggtcgaactgggcgtgctggaactggtcgaaaaa
gaagtgatccgctcgccgctggaggccgaaccggtacccaaggccgccccggtcacgttc
cacccggagcagcaggcggcgctggaccgcattaccgaggcgatcgaggcgcggcgtttc
gagacgttcctgctgcacggagttaccgggagcggcaagaccgaagtgtacatcgccgca
ctgaagcgcgtgcgcgctcagggacggacgggcatcatcctggtgcccgagatcgccctg
acgccccagacagtgcggcgcttccgcgcccatttcggcgacgaggtggccgtgctgcac
tcgcgcatgagcgacggcgagcgctacgacacctggcgtcagcttcgtgccggccgctac
cccatcgtgatcggtccgcgctcggccgtgctggctccgctggaaaacctggggctgatc
gtggtcgacgaagagcacgagcgttcctacaagcagttcgatccggccccgcgctaccat
gcccgcgacgtggccgtctaccgcgcctacctgaacggggccgtctgcgtgctcggctcg
gccacgcccagcctcgaaagctacctgaacgcccgaagcggcaagtacacgctactggaa
atgcgccggcgggcaccggccgtcgggcacacgccggcccgactgccgagcgtccgcctc
gtcgatctgcgccacacgcgcctggtcaacggcaacccgctggcgccgccgctggcgcgg
gccattgcgcaacgcttagaacgtggcgagcaggtcatcctgctacagaaccgccggggc
tttgcgcccgtgctggaatgcgccgaatgcggctggtcgccccactgcccgcactgctcc
gtcacgctcacctaccacaaggtgcagcaccagctgcgctgccactactgcggctacgcc
acgcgacaccccggcacctgccggcaatgcggtgcggcggcgctcgagccgctgggcatc
ggcacgcaacgcgtcgaagaagcgctgcgggcgctgtttccggaagcccgcgtgctccgc
atggacctcgacaccacgcgcggccgccgtgcccaccaccggctgctcgaccgcttcgcc
cggggcgaggccgacatcctgctcggcacccagatggtcgccaaggggctcgactttccg
cgtgtgacgctcgtgggcgtggtcaacgccgacacgggcctgctgctgcccgactttcgc
gccgacgaacacacctttcagctcctgatgcaggtggccggacgcgccggccgcgccgat
cgccccggcgaggtgctgctccagacacgcaaccccgaccaccgcgtcttccgctacctg
ctccggcacgactacgccgggctggcgcgcgagctgctggccgaacggcaccagctcggc
tatccgccctatgcccggctggccgtgctcgaatgcagcggccccgacgaagcgcgcgtg
gccgagctggcccggagctggaccgaacactttcagcaggtgtgccaccagcacgccggc
ggccatctgatcgacacgctgggccccaccccggcgctgcacgaacgcctcaaagggcgc
taccgctaccacgtgctcgtcaaggtgccccgccgcaccggggcgcccccgcttcagccg
ctgctccgccaggcgctggagaccttcccgcccctgccccgcgcctatcgcctcacgctc
gacatcgacccggccggactgagctga
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