Rhodothermus marinus DSM 4252: Rmar_2513
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Entry
Rmar_2513 CDS
T01119
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rmr
Rhodothermus marinus DSM 4252
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmr03016
]
Rmar_2513
Enzymes [BR:
rmr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rmar_2513
Transfer RNA biogenesis [BR:
rmr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rmar_2513
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
HTH_RNase_II
SH3_CYT4
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
ACY49389
UniProt:
D0MFD3
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Position
2923737..2925716
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AA seq
659 aa
AA seq
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MKPGTLVEYLEDDRPQFALVLASRDGSVQALTPTGRRIRLPVRRIAIRHERTATAEALAE
VVQALEAQIDALQAEIDLALLWETAREEGEAFDLEALARLYFGEAGPLEQAALLRALLSD
TLYFGRRGLTFVPRTPEQVEALQTAERRRREREAERRALRAQLEQLLDAEADELSEAPAA
LLDALEAYLRQKQRSETTEVLAEVARDRGMTTREAALEILLRTGRIDASIDTFALLAGIE
PTFPSEVLAAAEALVPFEPTGDRTDFTHLPAFHIDDASTREIDDAFTVEPLAEGGWRIGI
HLADVPHFVAPDDVLDREARRRGLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVV
TVDASEQIRDVQLVRGQIRVAHGFTYETADAVLSGETPHELAEALQVLARLSQTLTEARL
ARGALLIRRPELKVQVDGDTITLKVIDPDTPARRMVSEWMILANAEAARWAAENELPMIY
RVQDPPDDPELQGRKLDYDPVLLASRLRGLRRTRFSTHPQPHAGLGLEAYVQITSPIRRY
ADLALQRQIVAALADAPLPYDTTRLFEVLATAEAAEREARALEQQATRYWALVWLERHAA
QTFEAIVVARRPAGYLVELQPYGLRGLLATADALAPGDRVAVRPEAIDPRRGRLRLQRA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgggtacgcttgtcgaatatcttgaggatgaccggccgcaatttgcgctggtg
ctggcgtcgcgcgacggctccgtgcaggcgctgacgcccaccggacgccgcatccggctg
ccggttcgtcgcattgccattcgccacgaacgcaccgccacggccgaggcgctggccgag
gtggtacaggcgctggaagctcagatcgacgcgctgcaggcggagatcgacctggccctg
ctctgggagaccgcccgcgaagaaggcgaggcgttcgacctggaagccctggcccggctc
tacttcggcgaggccgggccgctggaacaggcggcgctgctgcgggcgctcttaagcgat
accctgtacttcggccgccggggcctgaccttcgttccgcgcacacccgagcaggtggaa
gccctgcagacggcggagcgccgccgccgggaacgtgaggccgaacgccgggcgctgcgc
gcacagctcgaacaactgctcgacgccgaggccgacgagctgtccgaggcgccggccgca
ttgctggacgcgctcgaagcctacctgcgccagaagcagcgctccgaaaccaccgaggtg
ctggccgaggtagcccgtgaccggggcatgaccacccgcgaggctgccctggagatcctg
ctgcgcacgggtcgcatcgacgcctccatcgatacgttcgcgctgctggccggcatcgaa
ccgaccttcccgtccgaagtgctggccgccgccgaagcgctcgtgcccttcgaaccgacc
ggagaccgcaccgactttacacacctgcccgcctttcacatcgacgacgcttccacgcgc
gagatcgacgatgccttcaccgtcgaaccactggccgagggcggctggcgcatcgggatt
catctggccgacgtgccccatttcgtcgcgccggacgacgtgctcgaccgggaagcccgg
cgccggggcctgacccgctacctgcccaccggctccattcccatgctgcccgagcgcctg
agccacgacctggccagccttcgtcccgacgcaatccgccccacgctgagcgtggtggtg
accgtggacgcctcggagcagatccgggacgtgcagctcgtgcgtggacagatccgcgtg
gcgcatgggttcacctacgaaacggccgatgcagtgctgtccggcgaaacgccgcacgag
ctggccgaggcgctgcaggtgctggcccgcctgagccagacgctgaccgaagcccggctg
gcgcgcggcgcgctgctgatccggcgacccgagctcaaagtgcaggtggacggcgacacg
atcacgctcaaggtgatcgatcccgacacacccgcccgacgcatggtcagcgaatggatg
atcctggccaatgccgaggcggcccgctgggcggccgaaaacgagctgcccatgatctac
cgcgtgcaggatccgcccgacgatcccgagttgcagggacgcaagctggactacgacccc
gtgctgctggccagccggttacgcgggctgcgccgcacacgcttttccacgcacccccag
cctcatgccggactcggtctggaggcctacgtgcagatcacctcgccgatccggcgctat
gccgacctggccctgcagcgtcagatcgtggccgcgctggccgacgcgccgctcccgtac
gacaccacccggctgttcgaagtgctggccaccgccgaggcggcagaacgcgaggcccgg
gcgctggagcagcaggccacccgctactgggcgctggtctggctcgaacgccatgcggcg
cagaccttcgaggcgatcgtcgtggcccgccgcccggccggctacctcgtcgagctgcag
ccctacggcctgcgtggcctgctggccacggccgatgcgctggcccccggcgaccgcgtc
gccgtacgtcccgaagcgatcgatccccgccgcggccgcctccgcctgcagcgggcctga
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