KEGG   Rhodothermus marinus DSM 4252: Rmar_2540
Entry
Rmar_2540         CDS       T01119                                 
Name
(GenBank) ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
rmr  Rhodothermus marinus DSM 4252
Pathway
rmr00230  Purine metabolism
rmr00240  Pyrimidine metabolism
rmr01100  Metabolic pathways
rmr01232  Nucleotide metabolism
Module
rmr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
rmr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:rmr00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    Rmar_2540
   00240 Pyrimidine metabolism
    Rmar_2540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rmr03400]
    Rmar_2540
Enzymes [BR:rmr01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     Rmar_2540
DNA repair and recombination proteins [BR:rmr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    Rmar_2540
SSDB
Motif
Pfam: Ribonuc_red_lgC LAGLIDADG_3 Ribonuc_red_2_N Intein_splicing LAGLIDADG_WhiA RUBY_RBDX
Other DBs
NCBI-ProteinID: ACY49416
UniProt: D0MFS7
LinkDB
Position
complement(2950825..2954889)
AA seq 1354 aa
MAKSPRKSSADTPELRRGLRIERVFSQEGVHPFDMVTWERRTAAIYNSKGEAVFEQKDVE
FPSTWSQLATNVVASKYFYGDLAAGNGDPREGKREYSLKQLIHRVTRTIADWGKAQGYFA
TPEDAERFYDELTWLCLHQYGAFNSPVWFNVGLYHQYGVRDTGSKTIYGWDFEKQRVVPV
DPYERPQASACFIISVEDSIDDIWQLMAESARLFKFGSGVGADWSKLRSTKEKLSGGGRP
SGPVSFMRVQDATGATIKSGGKTRRAAIMQTLKVWHPDIMEFVTAKAKEEKKAWALIEQG
YDGSFNGEAYSSVAFQNVNQSVRVTDEFMEAVLARRKFPLKAVTTGKVIEEIDAYELLYK
VAEGTWICGDPGLQYEDTIQRWHTCKNSGPINSSNPCVTGDTLVATEDGLRRIDSLVGET
PRVVGLDGRLHRTTRVIETGVKPVYRLRTRCGYEVKLTADHPVWTENRGDVPAAELTRND
IVRLVPPRFGREHLDPEVAEYIGLMVGDGCISHEVATLMLDRREKAVAEKVAQVVNQFDR
QTHFEGVRVAERPTGVAVATGARAVQEVLKRFAVLDEGSSAKRFTEEVFRLDRQSVAALL
RGLFTADGTVANYGRKSQYISLESTSRELLKQVQLLLLGFGIKSKLYENRRLTDRALLPD
GRGGVKEYRVQPLYSLRISRSSRVRFEREIGFLPESPKAAALRELNATVSAYEDPLVDQV
VSLELLGEEPVYDLTEPVTDHFVANGIAVHNCSEYMFLDNSACNLASLNLRKFQREDGSF
DVERFRAAVRIFITAMEILVDNAGYPSEKIAQNSHDYRPLGLGFANLGAMLMAMGLPYDS
DEGRAVAGAITAIMHAEAYARSAEIAAIEHIGPFPGFEKNREPMLEVMRMHQAAVEDIHL
SCPAYLKEAARESMARMVALGERYGYRNAQATVLAPTGTISFMMDCDTTGIEPDIALVKY
KLLAGKGDGMFKIVNNTVPIALRRLGYSEEQIKDILAYIEENDTIEGAPHLKEEHLPVFD
CAFKPYKGQRFIHYMGHIKMMAACQPFISGAISKTVNMPEHVTVEEIMDAYIQGWKLGLK
ALAIYRENSKRSQPLSTRKEDKKGETSGDGMATGEPKVIEKVVEKIVYKPVRKRLPDERP
SITHKFSVAGHEGYLHIGLYPDTGMPGEIFITMAKQGSTISGLMDAFATAISIALQYGVP
LEDLCNKFSHMRFEPAGFTNNPQIPIAKSIMDYIFRYLSLKFLGRPQEEKQENPRDGVAA
EVKRSGPARDERQLELSFEPQPTGKVTPLVGQTIETFLQTQQKSAAAAPEAAAVPTVSFQ
NQEDAPACSNCGSITVRSGACYVCPNCGSSSGCG
NT seq 4065 nt   +upstreamnt  +downstreamnt
atggcaaagtccccccgcaagtcgtcggcagacaccccggagctccgtcgcgggctgcgc
atcgagcgcgtattttcgcaggaaggcgttcatccgttcgacatggtcacctgggagcgc
cgaacggccgccatctacaacagcaaaggcgaagcggttttcgagcagaaggacgtggaa
tttccctcgacgtggagccagctcgccacgaacgtggtcgcgtccaagtacttctacggc
gatctggcggccggcaatggcgatccccgcgagggcaagcgggagtacagcctgaagcag
ctcatccaccgggtgacgcgcacaatcgccgactggggcaaggcccagggctatttcgcc
acgccggaagacgccgagcgcttctacgatgagctgacctggctctgcctgcaccagtac
ggcgctttcaactcgccggtctggttcaacgtgggcctctaccaccagtacggcgtgcgc
gacacgggcagcaagacgatctacggctgggatttcgaaaagcagcgggtggtgcccgtc
gatccctacgagcggccccaggcctcggcctgcttcatcatttcggtagaggactcgatc
gacgacatctggcagctcatggccgaaagcgcccgcctgttcaagttcggttcgggcgtg
ggcgccgactggtccaagctgcgctcgacgaaggagaagctttcaggcggtggtcggcct
tcgggtccggtttcgttcatgcgcgtgcaggacgccacgggcgccacgatcaagtcgggg
gggaagacgcgccgggccgccatcatgcagacgctgaaggtctggcaccccgacatcatg
gagttcgtcacggccaaagctaaagaggaaaagaaggcctgggccctgatcgagcagggc
tacgacggctcgttcaacggcgaggcctacagctcggtcgccttccagaacgtgaaccag
tccgtgcgcgtcacggacgaattcatggaggccgtgctggcccgcaggaaattcccgctc
aaggccgtgacgacaggcaaggttatcgaggagatcgacgcctacgaactgctctacaag
gtggccgagggtacctggatctgcggcgatccgggcctgcagtacgaggacaccatccag
cgctggcacacctgcaaaaacagcgggccgatcaactccagcaatccgtgtgtgacgggc
gacacgctggtggccaccgaggatggattgcggcgcatcgacagtctggtgggtgaaaca
ccgcgggtagtcggactggacggacgcctgcatcggaccacccgggtgatcgagacgggc
gtcaagccggtctaccgactgcgcacccgttgcggttatgaggtgaagctgacggccgat
cacccggtgtggacggaaaaccgcggtgatgtgccggccgccgaactgactcgcaacgac
atcgtgcgtctggtgccgccgcgcttcggtcgtgagcatctggatcctgaagtggccgag
tacatcggtctgatggtcggggacggttgcatttcgcatgaagtggccactttgatgttg
gatcggcgggaaaaggctgtggccgaaaaagtcgctcaggttgtcaatcagtttgatcga
cagacccattttgaaggtgttcgggtggcagagcggcctaccggagttgccgttgctact
ggcgctcgagccgtacaggaggttttgaagcggtttgctgtgctggacgagggttcgtca
gcaaaacgatttactgaggaagtctttcggctggatcgacagagtgtggcggcgctgcta
cgaggactgtttacggccgatggcacggtagccaactatggtagaaagagccagtacatc
agcttggaatcgacttcgcgcgaactcctgaagcaggttcagctgcttctgctgggcttt
ggtatcaagagcaagctgtatgaaaaccggcgtttgaccgatcgtgcattgttgccggac
ggtagaggtggggtaaaagaataccgcgttcagcctctatacagtctgcgcattagccgg
tcgagccgggtccgctttgagcgagagattggttttctgccggagagtccgaaggcggcc
gccctgcgtgagctgaatgctaccgtgtcggcgtacgaagatccgctggtcgatcaggtt
gtttcgcttgaactgctgggtgaggaacctgtctacgacctgacggagccggttacggat
cactttgtggccaacggcatcgccgtccacaactgctccgaatacatgttcctcgacaac
tcggcctgcaacctggcctcgctgaacctgcgcaagttccagcgggaggacgggtcgttc
gatgtcgagcgtttccgggcggccgtgcggattttcatcacggccatggaaatcctcgtg
gacaatgccggctatccgtcggaaaagatcgcccagaacagccacgactaccggccgctg
ggactgggctttgccaacctgggcgccatgctgatggccatggggctgccctacgacagc
gatgaaggacgggctgtggccggtgccatcacggcgatcatgcacgcagaagcctatgcc
cggagcgccgagatcgcggccatcgagcacatcgggccgttcccgggcttcgaaaagaac
cgggagcccatgctcgaggtgatgcgcatgcaccaggcggccgtcgaggacattcatctg
agttgtccggcctacctgaaagaagccgcccgcgaaagcatggcgcgcatggtggcgctg
ggcgaacgctacggctaccgcaacgcccaggccacggtactcgcgcccaccgggaccatc
tcgtttatgatggattgcgacacgacgggcatcgagccggacatcgcgctggtcaaatac
aagctgctggcgggcaagggcgatggcatgttcaagatcgtcaacaacacggtgcccatc
gccctgcgccgcctgggctacagcgaggagcagatcaaggacatcctggcctacatcgaa
gaaaacgacacgatcgaaggcgcgccgcacctgaaagaagagcacctgccggtcttcgac
tgcgccttcaagccctacaagggccagcgcttcatccactacatgggccacatcaagatg
atggccgcctgccagcccttcatcagcggtgccatctccaagaccgtcaacatgcccgag
cacgtgacggtcgaggaaatcatggacgcctacatccagggctggaagctcgggctcaag
gcgctggccatctatcgtgagaactccaagcggagccagccgctctcgacgcgcaaagaa
gacaagaagggcgagacgagcggcgacggcatggcgaccggcgagccgaaggtcatcgaa
aaggtcgtcgagaagatcgtctacaagccggtgcgtaagcggctgcccgacgagcggcct
tcgatcacgcacaagttctcggtggctggccacgaagggtacctgcacatcggcctgtac
ccggacaccggcatgccgggcgagatcttcatcacgatggccaagcagggctcgacgatc
tcgggattgatggacgcctttgcgacggccatctcgattgcgctccagtacggcgtgccg
ctcgaagacctgtgcaacaagttcagccacatgcgcttcgagccggccggcttcacgaac
aacccgcagattccgatcgccaagtccatcatggactacatcttccgctacctgtcgctc
aaattcctgggacggccgcaggaagaaaagcaggaaaatccacgcgacggggtggcggcc
gaggtgaaacgcagcggtccggcccgtgatgagcggcaactggagctgagcttcgagccg
cagccgaccggcaaggtgacgccgctggtgggacagacgatcgaaaccttcctgcagacg
cagcagaagagcgcggccgccgcgccggaagccgctgcggtgccgacggtgtcgttccag
aaccaggaagacgcgccggcctgctcgaactgtggttcgatcaccgtgcgctcgggcgcc
tgctacgtgtgcccgaactgcggtagctcgagcggttgcggctga

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