Rhodothermus marinus DSM 4252: Rmar_2564
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Entry
Rmar_2564 CDS
T01119
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03410
Base excision repair
rmr03430
Mismatch repair
rmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rmar_2564
03430 Mismatch repair
Rmar_2564
03440 Homologous recombination
Rmar_2564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_2564
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rmar_2564
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rmar_2564
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rmar_2564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACY49440
UniProt:
D0MFV1
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All DBs
Position
2983516..2985279
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AA seq
587 aa
AA seq
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MRKYRWVRRPLPDPSAVATLMAAARYLPEPLARVLVARGITTVEAARAFFRPELDQLHDP
FLMADMEAAARRLARAIEDREQVLVYGDYDVDGTTATALVTSFLKERGVPVRYFVPDRFR
HGYGLTQKALEEALEAGTRLLIALDCGITAAEEAAYARARGVDLIICDHHTAGATLPEAV
AVLDPKRPDCPYPFPELSGCAVAFKLVQATLQVLGESPEAAYRYLDLVALSTAADIVPLT
GENRILMAEGLRHLRRSTRPGLQQLAARARWPLETLTMHGIVFGLAPRINAAGRLGDANR
AVALLLAEDAATADKLAAELDAANRERQQIDRRTLEEAIVQAERQITARDDRHALVLYHP
DWHLGVIGIVASRIVERFYRPTILLCAVDSILKGSARSIAGINIYEALRDCEDLLLQFGG
HTYAAGLALEENRLEAFRERFNEAVGARMTPELLVPRLEIDALLDLHTLDERFWRLLQRF
GPHGPENEEPLFMARDLEVVGEPKLVGGEGKHLKFYVRQRAHPDDPPCEVIGFGKERLLP
AVQHSRRMGQPLALAFTLQENTWQGQTRLQLRLRDLKLQRVETPVGQ
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaataccggtgggttcgccgccccctgcccgatccgagcgccgtggccacgctg
atggcggcggcgcgctacctgcccgagccgctggcccgcgtgctggtggcccgggggatc
accacggtggaggcggcgcgtgccttcttccggccggagctcgaccagctccatgatccg
tttctgatggccgacatggaagcggccgcccggcgcctggcccgcgccatcgaagaccgg
gagcaggtgctcgtctacggcgactacgacgtggacggcacgacggccacggcgctggtg
acctcctttctgaaggaacggggcgtgcccgtccgctacttcgtgcccgatcgcttccgg
cacggctacggtctcacgcaaaaggcactcgaagaagcgctggaagccggcacccggctg
ctcatcgcgctggactgtggcatcacggccgccgaagaggcggcctacgcccgcgcgcgc
ggcgtcgatctgatcatctgcgaccaccacacggccggcgccacgctgcccgaggcggtg
gccgtgctcgatcccaagcgcccggactgtccctaccccttccccgagctttcaggctgc
gcggtggccttcaagctggtacaggccacgctccaggtgctgggcgagtcgcccgaggcg
gcctaccggtacctcgatctggtggcgctctcgacggcggccgacatcgtgccgctgacc
ggcgaaaaccgcatcctcatggccgaagggctgcgccacctgcgccggagtacgcggcca
ggcctgcagcaattggccgcccgcgcccgctggcccctggaaacgctcaccatgcacggg
atcgtgttcgggctggcgccccgcatcaacgcggccggacggctgggcgacgccaaccgg
gccgtggcgctgctcctggccgaagacgccgccacggccgacaagctggccgccgagctg
gacgcggccaaccgcgagcgccagcagatcgaccgccggacgctcgaagaagccatcgtc
caggccgaacgccagattacggcccgcgacgaccgccacgcgctcgtgctctatcacccc
gactggcacctgggcgtcatcgggatcgtggccagccgcatcgtcgagcgcttctaccgt
cccaccatcctgctctgcgccgtcgattccattctcaaaggctcggcccggtccattgcc
gggatcaacatctacgaggcgctgcgcgactgcgaggacctgctgctgcaattcggcggc
cacacctacgcggccggtctggccctggaggaaaaccggctcgaggccttccgcgagcgc
ttcaacgaggcggtgggcgcccggatgacgcccgagctgctcgtcccccgcctggagatc
gacgcactgctcgacctgcacacgctcgacgagcgtttctggcgcctgctccagcgcttc
gggccgcacggccccgaaaatgaagagcccctgttcatggcccgcgacctggaagtggtg
ggcgagccgaaactggtcggcggcgagggcaaacacctgaagttctacgtgcgccagcgc
gcacatcccgacgacccgccctgcgaggtgatcggcttcggaaaggaacgcctgcttccg
gccgtgcagcacagccgccgcatgggccagccgcttgccctggccttcacgcttcaggag
aacacctggcagggccagacgcgcctccagctccgattgcgcgacctgaagctgcaacgc
gtcgagacccccgtcgggcaataa
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