Rhodothermus marinus DSM 4252: Rmar_2800
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Entry
Rmar_2800 CDS
T01119
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmar_2800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmr03019
]
Rmar_2800
03009 Ribosome biogenesis [BR:
rmr03009
]
Rmar_2800
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rmar_2800
Messenger RNA biogenesis [BR:
rmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmar_2800
Ribosome biogenesis [BR:
rmr03009
]
Prokaryotic type
rRNA helicases
Rmar_2800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACY49668
UniProt:
D0MH79
LinkDB
All DBs
Position
complement(3254786..3256303)
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AA seq
505 aa
AA seq
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MAEEPVRSPYTTVIDLTRRAQQKKQEAAAVQATGEPLPEVSLAELPERMQQAARAIGWTE
LMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQALILTPTRELAR
QISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVVIGTPGRILDLIERGAL
RLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQALAREFLKDP
AFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELENPESAIIFANTKRDVEYLGQFL
KNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQD
PEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPLEKGTLPTPETVAERVAE
RAVALLEDRYRETTSLDRERIARFVPLVEQLAQEEPELLAMLVDALYVHEGHRRGIRSEA
EAEAPSPEQSAPPGKKRRRSRRKKS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagaaccggttcgctcgccctacaccaccgtcatcgatctgacgcgacgggct
cagcagaaaaaacaggaggcggcggccgttcaggccaccggcgagccgttgccggaagta
tcccttgcggagttgcccgagcgcatgcagcaggccgcccgggcgatcggctggaccgag
ctgatgccggtgcaacgccgcacgttgccctatctgctcgaaggtcgcgacgtgatcgtc
cagtcgcagaccggatcgggcaagaccggtgcgtttctgttgccgctgttcgagcggctg
gacccttcccgcgggcaggtgcaggcgctgatcctgacccccacgcgtgagctggcccgg
cagatctctgaggcgttcgagcagatgaaaacgggcgtctctggagcgcaatcgcttcgg
gccgtgctcgtctacggcggtgtgcgctacggtccgcagctcaaggcgctggagcagggc
gcccaggtggtgatcggcacgcccggtcgcattctggacctgatcgaacgcggagcgctc
cggctgggcgcgctccaggtgctcgtcttcgacgaagccgacgaaatgctctcgatgggc
ttttacccggccatgcgccagctcaagcgctacctgccgcgcgagcgcaacacggccatg
ttcagtgccacgatgccgccgcgcgtgcaggcactggcccgcgagtttctgaaggacccg
gccttcgtgtcgctgagcacggatcgaatcgcggccgagaccatcgagcatcgctacttc
atcgtgccgcccatggagaaagaccgggcgctcgtgcagctcattgaactggaaaacccg
gagtcggccatcatcttcgccaacacgaagcgcgacgtcgagtacctggggcagtttctc
aaaaactacggctacaatgccgacgcgatcacgggcgacctgccgcagaaacaacgggag
cggattatggaccggctccggaagggccagctccgcctgctggtggctaccgacgtggcg
gcgcgcggcatcgacatctcggatctgagccacgtgttcatgtacgacgtgccccaggat
cccgagtattatgtgcaccgctccggacgcaccgggcgcgtggggaaggaaggcaccacg
atcgtgctggtgacgccgctcgaggaggcgcggcttcgggcgattgcccgccagtacgac
attccgctcgaaaagggcacgctgcccacgcccgagaccgtggccgagcgggtggccgaa
cgcgccgtcgcgctgctcgaagaccgctaccgcgaaacgaccagtctggaccgggagcgg
attgcgcgcttcgtgccgctggtggagcagctggcgcaggaagagccggagctgctggcc
atgctggtggatgccctctacgtgcacgaaggacaccggaggggcattcgttccgaagcg
gaagccgaagcgccttcgcccgagcagagcgccccgcccgggaagaaacgccgccgctcc
cgccgaaagaagtcatga
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