Rickettsia massiliae MTU5: RMA_0020
Help
Entry
RMA_0020 CDS
T00605
Symbol
sca1
Name
(GenBank) Cell surface antigen Sca1
Organism
rms
Rickettsia massiliae MTU5
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
Motif
Other DBs
NCBI-ProteinID:
ABV84361
UniProt:
A8F0B7
LinkDB
All DBs
Position
18551..23920
Genome browser
AA seq
1789 aa
AA seq
DB search
MEIFIMNKLTEQHLLKKSRFLKYSLLASISVGAIIAIPFEGMAMSKEAFRIDLSNKLLNN
LSQLNGNKDTTNTPQQIGTVIVPEPEINTYTPSEIREMKISNKPKASNPLKDVPVEDHYK
VVARSKSDVGKARKVRPITRRKTFVGTEKTEQIQNTYTPEPTEQMLQKPEIIITASSPTV
SPASNNSFVTAPNTPNTTLISPEHYTTAPGTPSSTPVTPYQSTSDSKPNDSLGANTPPNT
NSKAARRLSFSSSDPQQQTVQSSSQVKPEVPPKSTFVPLPIKKSSTEIAAGMVSNISRVN
EMIGIKLAEVTQAIQKNTTDTKNTKSLQKLYMQLTSAQKTIETLKSKAEKIETQIKVGGE
DKNKIKKLEKKLTSKNNKADRLFQKIEKIDIPANKISIESQETVPVTTASTQVSAFQAQQ
ARINEAQQGVLVQKNQQHIAAEKTKKQRQAEDKQRTEREKKKQEAQKQLSEIKKQEQAIK
TAADKAKEVAASAKKETSRTALRTMQDKMNGYSEQLNEMANLKLLTPAVYNSSTGSTYKQ
PPKAKPTMPLSHGVQRILGEQPEDEEEYLVPIKVQQQPYIVILPSQEIENPKSMDSGLGS
LSSGTLGKETDHSKDIYEAKASQYINYLNSIQPNQSNQAQIDGVMDSLATEMRKLSADQF
NQKLGEIAHLASIKAYEGLFSKLYDIQQARVPETQKVYEQVEIFQSYAEYEEKSRKSATP
ILSRSSSAKSDSSRKNNVSGSIPEIQQLQSEKMRTETLGVQNDLGLDLHSQEERFDSGFR
SLESQNLSSAYDFDQLSASWDAAYNQRMNTNVPQETLTEESTYSGSSKKKQGNIIKRAVS
KVGSILQTNDAENRKRKRDGETSKQRTVDQEGGFGHAWGNENHKESSLSVVSGFTKKATQ
LVSLLDAKRTTILQTTSPSQKKSLNLVLQEIENDYHETIKISQELQQVLIHKPEDIKAYN
AKAEKKIDAIKSRADKHFNNIKTDADVGFNPNWGNSHSMPTANMNSLPNLVDSTIKKGTQ
PLSTIYESVSDENLASETIYKTEQPKPSISYKNTSKRKLPIPLFRSAELDKKLDYLDLED
KLLKVEEARIVKEKQAIAKLNQYRDPENLEFKRLAVEARDLSSKESQLKEKRKAIEAAFS
LNEEYSSTDVSISRSYSIGDISSLLSDAESNLSRSPSVSGLEDLNNSNVMKLGELESKHD
EKIANDYKAKVTESKPVFSCSSSVGSINSLSNGDDLSSRDVVTPVDTLTIEIDKDYVDTY
IRVLSNKIQKIEELPGSSSRSEELNHIKEAMAYISNRIQDVEELDEKMLLAMNARLQEHD
EKISSLLLEKYTGEEAADILAQLLLQDMLVSDGKSESTLPAGDEEQEDTEVTEVSRQLSS
LPALASSNECALALSDDREKECLALGDGSEDKESYDSGFEEEEETIGQLSDSDGGNLKIT
EVDTAIPLEQEAKKEMQTQISENAPTLNQVKVVNTIVNNMIRNRLDASMNMSNNMVAVGA
GDEEESHIKRGLWMRGMYGTNNHGRVENMTGYRGTNKGATIGFDAEIDNNIVGIAYSNVH
SVFKFKNSKNNDKELINSHVVSIYGQKELPKNFALQALVSASKNFIKDKTTYSYGDTKIR
SNVKHRNHSYNAEALLHYNYLLQSKLIITPNIGLRYGKSRDGVYHETGINVQEIALTMKE
NNILSGIVGTKVTVPLKDALKFNNLGLTFQGAVEHNFKEKTQRINRVVKIFDNTFKHNYL
IPKQPKTSYNLGTGIIGSIKNTTISLDYNYYLNKHYRSHQGSVKLKVNL
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
attgagatatttataatgaataagttaacagaacaacatttactaaaaaaatcaagattt
ttaaaatattctctgcttgcctctatttcagtaggagcaataattgcaataccttttgag
ggtatggcgatgagtaaagaagcatttcgtatcgacctcagtaataaattgttgaataat
ttgtcacaattaaacggaaacaaagatacgacaaataccccgcagcagataggaacagta
attgtaccggaaccggaaataaacacatatactccatctgaaataagagaaatgaaaata
tctaacaaacctaaggcatctaatccattaaaagatgttcctgtagaggatcattataaa
gtggtagcacgtagtaagtctgatgtcgggaaagcaagaaaagtacgaccaattactaga
cgcaaaacatttgtaggcactgaaaaaacagagcaaattcaaaatacttatactcctgaa
ccgacagaacaaatgcttcaaaaaccagagattataataacagcgtcttcacctactgtt
agcccagcttcaaataatagttttgtcactgcacctaatacaccaaatactaccctgata
tcacctgaacattatactacggcacctggtactccatcatcaacaccggtgactccgtat
cagtctacttcagattctaaaccaaatgatagtttaggagctaatacaccaccaaacaca
aactcaaaggcagcacgcagattatcgtttagcagtagcgacccgcaacaacagacagtg
caatctagctcgcaggttaaaccagaagttcctccgaagtcgacatttgtaccgttgcct
ataaaaaaaagcagtactgaaattgcagcaggaatggtaagtaatatatcacgagttaat
gagatgataggaatcaagttagctgaagtaacacaggctattcaaaaaaataccacagat
acaaaaaatacaaaatcattgcagaagttgtatatgcagctaacttcagcacaaaaaaca
atagaaacactcaagtcaaaagctgaaaagatagaaacacaaatcaaagtaggtggtgaa
gataaaaataaaataaagaaacttgaaaaaaagttaacaagtaaaaacaataaagcagat
agattatttcagaaaatagaaaaaatagatattccagcaaataaaatttcgatagaatcg
caggaaacagttccggttacaacggcgtcaacccaagttagtgcgtttcaagcacagcaa
gcaagaattaatgaggctcagcaaggtgtattagtacaaaaaaatcaacaacatattgct
gcagaaaaaacaaaaaaacagcgacaagcagaggataagcaaagaacagaaagagaaaag
aaaaaacaagaagcacaaaagcagttatcagaaataaagaaacaagaacaagctataaaa
acggcagcagataaagctaaagaagtagctgctagtgcgaaaaaagaaacaagtagaacg
gcattacgaaccatgcaagataaaatgaatggttattctgaacaattaaatgagatggca
aatctaaagttattaactcctgctgtttataatagttctaccggttctacttataagcag
ccgccaaaagcaaagccaaccatgccattaagtcatggggttcagagaattttaggtgaa
caaccagaggatgaagaggagtacttagtaccaataaaagttcagcagcaaccttatata
gtaatattgccgagtcaagaaatagagaaccctaaaagtatggattcaggcttggggagc
ttatcaagcggcactttaggtaaagaaacagatcattcaaaagatatttacgaggctaag
gcttcacaatacattaattatttgaatagcatacagccaaatcagtcaaatcaagctcaa
atagatggtgtaatggatagtttagcgacagaaatgagaaagttaagtgcggatcaattt
aatcaaaaattaggtgagattgcacatcttgccagtataaaggcatatgaaggtttgttc
tcgaaattatatgacattcagcaagctagagttccggaaactcaaaaagtatatgagcaa
gtggaaatatttcagtcttatgcagagtatgaagagaagtcaagaaaaagcgctactcca
atattatcacgctcgtcttcagctaaaagtgactcatcgaggaaaaataatgtaagtgga
agtattccggagatacaacaattgcaatcagaaaaaatgcgtaccgaaactttaggtgtg
cagaatgatctagggctagatttacattcacaagaagaacgttttgattcaggctttagg
agtttggaaagtcaaaatttgtcgtcagcctatgatttcgatcaactatcagcgagttgg
gatgcagcgtataaccaaagaatgaatacaaatgtacctcaagaaactttaactgaagaa
agtacctattcaggttctagtaagaaaaaacaaggtaatataataaagagagctgtatca
aaagtagggtcaattttgcaaacaaatgatgcagagaacagaaaaaggaaaagagatgga
gaaacctcaaagcaaagaacagtagatcaagagggaggatttggccacgcctggggaaat
gagaatcataaggagtctagtttaagtgtagttagtggattcacaaaaaaggcaactcag
cttgtaagccttttagatgcaaagagaaccacaatactgcaaacaaccagtccttcacaa
aaaaaatcacttaatttagttttacaggaaatagaaaatgattaccacgaaacaattaaa
atctctcaagaactacagcaggtattaatacacaaaccggaagatataaaagcatataat
gcaaaagcagaaaaaaaaatagatgctattaaaagcagagcagataaacactttaataat
ataaaaacagatgcagatgttggatttaatccaaattggggaaatagccattctatgccg
actgctaatatgaatagcttaccaaatttggttgatagtactattaaaaaaggtacacag
ccattatctactatatatgagtcggttagtgatgagaatttagcatcagaaacaatatat
aagacagagcaacctaagccatctataagttacaagaatactagtaaacgaaaattacct
ataccattattcagaagtgccgagcttgacaagaaattagattatttggatttagaagat
aaactattaaaagtagaggaagctagaatagttaaggaaaagcaagctattgccaaattg
aatcaatatcgagatccagaaaacctagaatttaagcggttagctgtagaagcacgagac
ttatcttcaaaagaatcacaattaaaagaaaaaaggaaagccatagaagcagcattttct
ttaaatgaagagtattcaagcacagatgtatcaatatcacgttcctattcaattggtgac
ataagcagtttacttagtgatgcagaatcaaatctatcccgttcaccttcggttagtggc
ttagaggatttaaacaattctaatgttatgaaattaggggaattagaatctaaacatgat
gaaaaaatagccaatgattataaagctaaggtaactgagagtaagccggtattttcatgt
tcatcttcagttggtagcataaacagcttatctaatggtgatgatttgagtagtcgtgat
gttgtaactccggtagatactctaactatagaaattgataaagattatgtagatacctat
ataagagtattaagcaataaaatacaaaaaatagaagaattgcctggctcaagttctaga
agtgaggaacttaatcatattaaggaagcaatggcttatataagtaatcgtatacaggat
gtagaggaattagatgaaaaaatgcttttagcaatgaatgcacgattacaagaacatgat
gaaaaaatttcttcgttacttctagagaagtatacaggcgaagaagctgcagatattctt
gctcagttattgttacaagacatgttagtgtcggatggtaaatcagaatctaccttacct
gcaggagatgaagaacaagaagacacagaagtaacagaagtaagtagacaattatcttca
ttacctgcacttgcatcaagtaatgagtgtgcattagcattaagtgacgatagagaaaag
gaatgtttagcattaggcgatggtagtgaagataaagaaagttatgattcagggtttgaa
gaggaagaagaaacaatagggcaattatccgattccgatgggggtaatcttaaaataacg
gaagttgatacggctattcctcttgaacaggaagcaaaaaaagaaatgcaaacgcaaatt
tcagaaaacgctcctactttaaatcaagtgaaagttgttaatactattgtaaataatatg
attcgtaacagattagatgcatctatgaatatgtctaataatatggtagcagtaggagcc
ggtgatgaagaagagtctcatataaaaagaggtttgtggatgcgtggtatgtacggcact
aataatcatggacgcgttgaaaatatgaccggttatagaggtactaacaaaggtgctact
atcgggttcgatgctgaaatcgacaataatatcgtaggtatagcttatagtaatgttcat
tcagtatttaaatttaaaaatagtaaaaataatgataaagaacttattaatagtcatgtg
gtttctatttacggacaaaaagaattaccgaaaaattttgcactacaagctttagtctct
gcttctaaaaactttattaaagataaaacaacttattcatatggtgatactaaaattaga
agtaatgtaaaacatcgtaatcatagttataatgcggaagcattactgcattataattat
cttttgcagagcaagctcattattaccccgaatatcggcttaagatacgggaagtcacga
gacggggtatatcatgaaaccggtattaacgtacaagaaatagctcttacaatgaaagag
aataatatattgtccggaattgtcggtactaaagtcacagtacctttaaaagatgctcta
aaatttaataatttaggtctaacattccaaggagcggtagaacataattttaaagagaaa
acccaaagaataaatagagttgttaaaatatttgataatacattcaaacataattatcta
ataccgaaacaaccgaaaacatcctataatttaggaacgggtattataggcagtatcaaa
aatactactatttcgttggattataattattatctaaataaacattatagaagtcatcaa
ggtagtgttaagcttaaggtaaacctataa
DBGET
integrated database retrieval system
