KEGG   Rickettsia massiliae MTU5: RMA_0190
Entry
RMA_0190          CDS       T00605                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rms  Rickettsia massiliae MTU5
Pathway
rms03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rms00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RMA_0190 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rms03021]
    RMA_0190 (rpoC)
   03400 DNA repair and recombination proteins [BR:rms03400]
    RMA_0190 (rpoC)
Enzymes [BR:rms01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RMA_0190 (rpoC)
Transcription machinery [BR:rms03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RMA_0190 (rpoC)
DNA repair and recombination proteins [BR:rms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RMA_0190 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 RnfC_N
Other DBs
NCBI-ProteinID: ABV84484
UniProt: A8F0P8
LinkDB
Position
188111..192235
AA seq 1374 aa
MFMSVVNFCGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCA
RIFGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTMRDIEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTA
SIGAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVEDFLESENKPEWMI
MDVLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRM
LQEAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKKMVEAEKSEVWDVLEEVIRE
HPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCTAFNADFDGDQMAVHIPLSIEAQL
EARVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALY
NKFITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKD
ISLVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLE
IQEFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDDPNHQRINAIYM
MAISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQI
DTALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTA
AIDIFHPVTNDLILNKGELISEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLA
TGTLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRN
VVINSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYT
IPIITEKSGKVLFKDMVEGITIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLGAKG
EVITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVE
ARRPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKK
GDLLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEV
TDSGGTTLLAGEKIDRHEFDEINAKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQ
ETTRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAIKLDEENV
NT seq 4125 nt   +upstreamnt  +downstreamnt
atttttatgagcgtagtaaatttttgcggacaattaagtaatactcaacaatttgatcag
ataaggattaatatagcaagtcccgatcaggtacgttcttggtctttcggtgaagtaaca
aaacctgaaacaattaactatcgaacttttaaacctgagaaagatgggttattttgtgca
agaatttttggtccggtcaaagattatgaatgtctctgcggtaaatataagcggatgaaa
aaccgtggaattacgtgtgagaaatgcggcgttgaagttacggtttctagagtaagacgt
gaaagaatggggcatattgaacttgcagctcctgttgctcatatttggtttttaaagtcg
ctaccttcaagaattagtacacttcttgatatgacaatgcgagatatagaaaagattctt
tattttgaaaattatgtagtagttgacccagggctatcgattttacaaaaaggcgaactc
ttaacagaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcc
tctataggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaag
caagaattatacgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaattagta
aagcgtttaaaattagtagaggattttttagagtcggaaaacaagccggaatggatgatt
atggatgttttaccggttattcctcctgaaattagaccgcttgttatgcttgacggcgga
agatttgctacttcagacttaaatgaactttatagaagggtaattaatagaaataatcgt
ttaaagaaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatg
ttacaagaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcgaaaaat
gctaataagcgtccatttaagtcattaagtgatatgcttaaaggtaagcaggggcgtttc
cgtcagaacttgctaggtaagagagttgattactcaggacgttcagttatcgtggtagga
cctgagcttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaag
ccgtttatttattctaagcttgagttgtacggcatcgctacaactattaaagccgctaaa
aaaatggtggaagctgaaaaatccgaagtgtgggatgtgcttgaagaggtaattagagag
catccggttttacttaatagggctccgacgttacataggcttggtattcaagcatttgaa
ccgctattaattgaaggtaaagcaatccagcttcatccgcttgtgtgtactgcgttcaat
gcggattttgatggtgatcagatggcagtacatatcccgttatcgattgaagcacagctt
gaagctagggtatttatgatgtctacgaataatatcttaagccccgcaaacggtcgtcct
atcattgtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgat
aatgaagtaggcgcagggatgatgttctcagatttagctgagatggaacatgctttatat
aataaatttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaa
ggtaaaatggtccctgttatcattgatactacttacggtaggttaatggttggtgagtta
ttgccttctaaccctaatatagaattcaagtttattaataaacaactaactaaaaaagac
atatcattagttatagatttagtttatcgtcactgcggtcaaaaagctacggtaattttt
gccgatcagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcatttgga
atggacgatatggtagtaccggaatctaagagtactcatatcaacgaaactcagcttgaa
atacaagaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataat
aaagtagtcgatgcttggtccagatgtaccgatagagtagcaaacgacatgatgaaagag
attgctacgccgccggttaatgatgatccaaatcatcagagaataaatgctatatatatg
atggctatttccggagcaagaggttctttccagcaaattaagcagctaggcggtatgcga
ggtttaatgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaag
gaaggattaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaata
gatacggctttaaaaacggcaagctcaggttacttaacaagaaaattagtagatgttgca
caagattgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagt
gttattgaaggcggagaagtgatagtacctttagctgaaaagattttaggtcgtactgct
gctattgatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttatt
agtgaagcaaagttagagcagattgagtcggcgggactcgacagaattatgataaaatcc
gtattaacctgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgct
accggtacattagtatcggagggtgaagcaatcggggttattgctgctcaatctatcggt
gaaccgggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggt
gctgaggtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagccgtaac
gttgttattaattccgaagaacgcaaaattgttatgagccgaaattgtgaattattattg
cttgataataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattactt
gttgatgacggtgatatggtgattaaaactcaaaaactagcagagtgggatccttatact
ataccgattatcacggagaagtcaggtaaagttttattcaaagatatggttgagggtatt
actattcgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatca
aagcaatattcacgcggtgcagaattacgcccgcgtatacagcttttaggtgctaaaggt
gaagttatcaccttatcaaacggtttagaagctagatattacttgccggttggagcagtt
ttaagcgtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaa
gaatcaaccactactaaagatattaccggtggtttaccaagagttgccgagcttgtagaa
gcaagacgccctaaagatcatgcagttattgccgaaattgacggtagagtagaattcggt
aaagactataaatctaaaagacgtattattatacatccgattgatgaaacaatgtctatt
gagtatatggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaa
ggtgatttattgattgacggtaatccggtacttcaagatattttaaaagtaatgggcgta
gaggttcttgcaaattatattgttaaggaggttcaagccgtttatcgtctacaaggtgta
aagattgatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggtt
acggattcaggtggaactacgttattagcaggtgaaaaaatagatagacatgaatttgat
gagataaatgcaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatatta
caaggtattactaaagcttctctgcaaactagatcgtttatctctgcggcatcattccaa
gagactactagagttttaactgaagcagctattgccggtaaagtcgataagttgcgagga
ctaaaagaaaacgtgatagttggacgattagtacctgccggaaccggttactttatggat
aaaatgcgtaaagcagccataaagcttgatgaagagaatgtataa

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