Rickettsia massiliae MTU5: RMA_0349
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Entry
RMA_0349 CDS
T00605
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rms
Rickettsia massiliae MTU5
Pathway
rms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMA_0349 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rms03019
]
RMA_0349 (rne)
03009 Ribosome biogenesis [BR:
rms03009
]
RMA_0349 (rne)
Enzymes [BR:
rms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RMA_0349 (rne)
Messenger RNA biogenesis [BR:
rms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RMA_0349 (rne)
Ribosome biogenesis [BR:
rms03009
]
Prokaryotic type
rRNA processing factors
RMA_0349 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABV84604
UniProt:
A8F118
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All DBs
Position
353015..355087
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AA seq
690 aa
AA seq
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MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI
EYGMDKSGFLPFSEIHPNYYNLPTLERNFPVNAFPEIALANITVEDDKEKPAAIYDSLVD
SEEIDLKTIEDLVESKFQSELNLEAADDIEIIQSGTPESNIPQYKQYKVQEVIRKNQILL
AQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKIVS
GDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTLKFPAPCFIHEEDSIIRKTI
RDMCDHNVKEVVIQGQEGYEDASKFMQDLLPSELAKLKEHKSKTPIFTKFQVEEQLVKLY
QPVVTLPSGGYIVINPTEALISIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLRDL
SGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFLET
NSAICSHCNGKGVIRASDANAMLILRTIENEIFEERTDVINVFTNIVSVIYLLNNKRAEI
KFIEEKYNIKLNFYSDPNATSDSYSIEKVKLLKKNNNNVNSVKPVIQNHSADYTEEELKK
EQLRKNKHKWKTANNSNNIANEVKDKSLEAKESVEQTVSVVEEVKVVESNAGLEEAQAAP
KKTKRRYRNKTSNKKRPSNTVEDTEKNAES
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagattataattgatgctaattttccaagcgaaacaagagtagttttatta
ggacaaagcaacaatatagaagatattgaatttcaaacaaccgtaagacaacaaaataaa
ggtaacatttatttagcaaaagttacaagaatagaaccgtcgctacaagctgtttttata
gagtacggaatggataaaagcggttttttaccgtttagtgaaatccatcctaactattac
aatttgcctaccttggagagaaattttccggttaatgcttttcctgaaatagctcttgca
aatattacggttgaggatgataaagagaaaccggctgctatatatgattctttggttgat
agtgaagaaattgacctaaaaaccatagaagatttagtagagagtaaattccagtcagaa
cttaatttagaagcggctgatgatattgaaattattcaaagcggtacccctgagtcaaat
attccgcaatataaacaatataaagttcaagaagtaataagaaaaaaccaaatattatta
gcgcaggttactaaggaagaacgaggcaataagtgtgccgcttttactacttatatatcc
ttggctggtaaatattgtgttttaatgcctaataaaggttcgcaaaacggtatatcgcgt
aaaatatccaacggggaagaaaggaaaagactgaaagatattttaaataaaatagtaagc
ggtgacaaaaatgcttatagcgtcattgttagaaccgcaggtagaggaagtagcacctta
gatttaaagaaagactataattatttagcaaggttatggaataaaattcgtaaaagtact
cttaaatttccagctccgtgttttattcatgaggaagatagtataatacgtaaaaccata
cgtgatatgtgcgatcacaatgttaaagaggtggtaattcaaggacaagagggttatgaa
gacgcttcaaaatttatgcaggatttattaccttcagagcttgcgaagctgaaagagcat
aaaagtaaaactcctatatttactaagtttcaagtagaagagcaattagttaaattatat
cagcctgtagtgacgttaccttcaggaggatatatcgttattaatcctacggaagctctt
atttcaattgatgtaaattccggtaaatccacttctgaacaaaatattgaagaaacggca
ctaaaaactaatttagaagcagccaaagaagtagcaaagcaagtaaagcttagagatcta
tcaggtttgatagtggttgattttatagacatgagcgaagctaagaatcgtaaaattatt
gaacgatcctttaaagagtttttaagtcgtgatcgtgctcgtatacaaaccggtaatatt
agtcagtttggactgcttgaattctcaaggcagagattacgttcttctttcttagaaact
aattcggcaatttgttctcattgtaacggtaaaggagtcattagagcgagtgacgctaat
gctatgttaattttacgtactatagagaatgaaatttttgaagaaagaactgatgtaata
aatgtttttaccaatatcgtttcagttatttatctacttaataataaacgtgctgagata
aaatttattgaagaaaaatataatataaagcttaatttttattccgatcctaatgctaca
tcagatagttattcgattgaaaaagtgaagctgttgaagaaaaataacaataatgttaat
tctgttaagccggtaattcagaatcatagtgccgattatactgaagaagagctgaaaaaa
gaacagttacgcaaaaataaacataaatggaaaacagctaataatagtaataatattgct
aatgaagtaaaagataagagtttagaggcaaaagaatcggtagagcaaaccgtaagcgtt
gtggaagaggtgaaagttgtagaaagtaatgccggcttagaagaagcacaagctgctcca
aaaaagacaaaacgtagatatcgtaataaaacatcaaataagaaacgtccttctaatacc
gtcgaagatacggaaaagaatgcagagtcttga
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