Rickettsia massiliae MTU5: RMA_0945
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Entry
RMA_0945 CDS
T00605
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rms
Rickettsia massiliae MTU5
Pathway
rms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RMA_0945 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rms03400
]
RMA_0945 (mfd)
Enzymes [BR:
rms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RMA_0945 (mfd)
DNA repair and recombination proteins [BR:
rms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RMA_0945 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ABV85017
UniProt:
A8F281
LinkDB
All DBs
Position
complement(941425..944829)
Genome browser
AA seq
1134 aa
AA seq
DB search
MTQNSKNINSCRMLQQKFPAAAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFS
SNENIYYFPSYDTIPYDHTSPNANILSTRAETLTKLTTNNSNSKLLITHTANLLNKLPPK
DFFSKYFLKLSPKMKFTTDELAMFLVENSFTRNASSIDAGEFAVRGEIIDIILPGPKAYR
IHFSWGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTD
NPLYEAVISGRKFTGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKQAILEFEHSYNDFY
SARSEANKLKFNSFYPTLSPTSLYFTASEITELLERKNNILLTFENSEQASLIENISATS
FIEKKTVFDKLFEVIKANSHKKIIIGSSVLSSCERIKSIIQNYEYKYNEINKLDEAKASI
INVGIIPLNQSFYTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDH
GIGQFLKLEALEIKGKPQHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVSW
QRSKAKLKNRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAIN
DIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHF
SRFIERFKGFGLNIKQLSRVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLL
IIDEEQHFGVGQKELLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEV
RTSVMPFDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPELSYKIAHGKMT
PSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRGRIGRG
KMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQ
IKEVGTELYQEMLEEQIAIFKDAPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRR
IGNLRNEIEVETFKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIANLDSGDNGFVIKF
YKNADMTDKILKFVSTYSNQAKIKPDNKLVYIKKLVDKNIIVEVNQLLWNLSEV
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
attacgcaaaatagcaaaaatataaactcctgtagaatgttacaacaaaaatttccggcg
gctgccaaatctttctttgcaattgataattttactaagaatcttaagcaagatttcatt
ttgagtgcgagtaatgaagaggaggcgttgcaattatacaagcaagctttatttttttct
tctaatgaaaatatttattactttccaagctatgataccatcccttatgaccatacgtca
ccaaatgcaaatatcttatctacacgtgcagaaacattaaccaagctaacaacaaataat
agtaatagcaaattactcatcactcatacagcgaacttattaaacaaattaccgccgaaa
gattttttttctaaatattttttgaaattatcccctaaaatgaaatttactacggatgag
cttgctatgtttctagtagaaaatagttttacaagaaatgcgagtagcatcgatgctggg
gaatttgcggttagaggcgaaatcattgatataatattgcccggtcctaaagcgtataga
attcattttagctggggttatattgaatcaataaaagaatttgatattgatacgcaaatt
tcgactaaatcctgcagggagcttattattagtcctgcaaatgagatagttttaaatagt
gaaactataggtaattttaagaataattacttacgaaattttggagttaatcatactgat
aatcctttatatgaggcggtaatatctggaagaaaattcacaggatatgaacaattactc
ccgttattttacgattcctgctctaacttaatagattatttaaacgatcctattttcata
ttcgataatttgtcaaaacaagccattttagaatttgaacatagttataacgatttttat
tcggcaaggtcagaggcaaataaacttaaatttaatagtttctatcccaccctttcaccg
actagcttatattttaccgcttctgaaataacggaattactagaacgaaaaaataatata
ctacttacttttgaaaactcagagcaagctagcttaattgaaaatatatctgctacaagt
tttatagaaaagaaaacggttttcgataaattatttgaggttattaaagcaaattctcat
aagaaaattattataggctcaagcgttttaagtagttgtgagcgaatcaaaagcataatt
caaaattatgaatataaatataatgagataaataaattagatgaggctaaggcttcaata
ataaatgtcgggataattcctttaaatcaaagcttttatacgaaagaatatttatttatt
accgctagcgaattattagaagaaaaacctagctctacaaacactaacaaaaaacttaaa
aatatcttgctggagcttgataatttagctgaaggcgaatttgttgtgcacaaagatcat
ggaatagggcagtttttaaagctagaagctttagaaatcaaaggcaaaccacaacatgat
tttttgaagattttatatgccggcaatgataaattatatataccagttgaaagtatagag
gtaataaaaaaatacggcaatgataatgcggagcttgataagcttggtagcgtttcatgg
caaagaagtaaggcaaagcttaaaaatcgtataaaagagatagcgctgcatttaatacaa
atagcagctaaaaggaaacttaatagtagtgcttccgttgaatttgaccttgaagaatat
gataaattttgtgctaattttcctttcagcgaaacggaagaccaattaaccgctataaac
gatattaaagaagatctaagaaacggtatgttaatggataggttaatatgcggtgatgtc
gggtttggtaaaacagaggtagcaatgcgtgccgtctttatggtagcaaaatctctaaat
gaacatttacctcaagtagccgtagttgtaccgacaactattttatgtagtcaacatttt
tcaagattcatagaacggttcaaaggttttggtttaaatatcaagcaattatctagagtt
attagttctaaagaagcaaaaattataagatcggagcttgaaagcggtaaaataaatata
ataataggcactcattctttattacataaaaatataaaattctttaatttgaaattgtta
ataatcgatgaagaacaacatttcggcgtcggtcaaaaagaattgcttaaatcgctaaaa
tcctcttcccatgtacttgcaatgtcggcaacaccgattcctcgaacgctgcaaatgtca
atgaccggtttaaaagaacttagcattattgcaacgccgcctctcaacaggctggaagtg
cgtacctcggttatgccgtttgatcccgttattatcagagatgcattattacgcgaacat
tttagaggcggaagaagcttttatgtagttccaagaattaaagatatagaggatatcgaa
aaacaattaaaacaaattgtgccggaattaagctataaaatagctcacggaaaaatgact
ccgagtaaaattgatgaggttatgagcgagttttatgccggtaaattcgatatactagtc
tcaactactattatagaatcaggaattgatatagccgaggcaaataccatgatcatacat
aaggctgatatgctgggtcttagtcagctatatcaattgcgtggtcgaataggtcgaggt
aaaatgcggggttatgcctatctaacggtagcaagtcataaaaagatgacatcgcactcc
ttaagacgcttagagataatacaaaatagttgtgctttgggctcaggttttactattgca
agccatgatatggatttacgaggtttcggtaatttgataggtgaagaacaatcaggacaa
attaaagaagtaggtacagaactctatcaagaaatgctggaagaacaaatagctattttt
aaagatgcaccgattgtttcagaacaaccctttatcccgactattaatttgggattatcc
gtctttattccagataattatgtagccgatgcagctcttaaacttggactatatagaaga
ataggtaatttacgtaatgagatagaagtagagacatttaaagatgagatgattgataga
ttcggtttactaccgattgaatttaataatttacttgatattgtaaaaataaaactatta
tgctttaagttaaatattgcaaatctagattcaggagataacggatttgtgattaaattt
tataaaaatgccgatatgactgataaaattttaaaattcgttagtacttactctaatcag
gcaaaaatcaaaccagataataaattagtatatatcaagaaattagtagataaaaatata
attgttgaggtaaatcaactactttggaatttatcggaggtgtag
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