Roseomonas marmotae: IAI58_04740
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Entry
IAI58_04740 CDS
T08030
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmt
Roseomonas marmotae
Pathway
rmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IAI58_04740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmt03021
]
IAI58_04740 (rpoC)
03400 DNA repair and recombination proteins [BR:
rmt03400
]
IAI58_04740 (rpoC)
Enzymes [BR:
rmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IAI58_04740 (rpoC)
Transcription machinery [BR:
rmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IAI58_04740 (rpoC)
DNA repair and recombination proteins [BR:
rmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IAI58_04740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QTI80078
LinkDB
All DBs
Position
1007754..1012022
Genome browser
AA seq
1422 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKITIASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFMKSL
PSRVGLMVDMSLKELEKVLYFESYVVLEPGLTDLKLHQLLTEEQYQSKMDEFGEDAFSVG
IGAEAVKQMLAAIDLDKESTQLRVDLKETNSEAKRKKYVKRLKMIESFKEGGARPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
EMKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFRVAQKELEEIRAAITGANG
KSVDALTGAERKALEHRPHVFGDLGEVEQALAAGAINLHTAVMARVAAPTEDNPRRHETV
LTTAGRMMMGALLPRDPRTPYSLVNRQLTKKSISDVMDAVYRHCGQKESVIFADRLMSLG
FKQAAKAGISFGKDDMQIPAEKEGLIAATKGEVKEFEQQYLDGLITAGERYNKVVDAWSR
CTDEVATAMMKEISRQEVGRVTNSVWMMSHSGARGSPAQMRQLAGMRGLMAKPSGEIIEQ
PIIANFKEGLSVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVENDCGSE
RGITVRAVMDGGETVSSLSERILGRTIQRDVVDPETGEILFPRNTLVDEPAAEAIEKSGV
EEVYIRSVLTCEARSGVCGHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHI
GGAAQRGAEQSAVEATGDGTVSVLNRVVVQNSQGNPIVMSRNCEIVLSDANGRERARYRV
PYGARLLVLEDGLAVTRGQKLAEWDPFTLPIITEKGGIIEYADLIEGVTLVERQDEVTGL
SSKVVVDYKQAARGADLRPRIILKDERGNIVKLANGAEARYFLSPDSILSVDNGAQVQAG
DVVARLPRESSKTRDITGGLPRVAELFEARRPKDHAIISEIDGRVEFGKDYKAKRRILVV
PEQVGDEPPVPREYLVPKGKHVSVQEGDYVKAGDPLVDGPRVPHDILRVLGVEALANYLV
NEIQDVYRLQGVKINDKHIEVIVRQMLQKVEIIEPGDSTYLVGETVERIEFEIENEKLVA
NKERPARAEPVLQGITKASLQTTSFISAASFQETTRVLTEAAVAGKVDFLAGLKENVIVG
RLIPAGTGSVMNRLRALAAQRDSQRLPQSQTALPKSGAQAAE
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgatgaagatcctgggccagactggccaggcgatgacgtttgatcagatc
aagatcacgatcgcctcgccggagcagatccgctcctggtcctatggcgagatcaagaag
cccgagacgatcaactaccgcaccttcaagccggagcgggacgggctgttctgcgcgcgc
atctttggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcggatgaagttc
cgcggcatcatctgcgagaagtgcggcgtcgaggtcacgctggccaaggtgcgccgtgag
cgcatgggccatatcgagctggccagcccggtcgcgcatatctggttcatgaagtcgctg
ccttcgcgcgtcggcctcatggtcgatatgtcgctgaaggagctggagaaggtcctgtac
ttcgagtcgtatgtggtgctggagccgggtctgaccgacctgaagctgcaccagctgctg
accgaggagcagtaccagtccaagatggacgagttcggcgaggatgccttctccgtcggc
atcggtgccgaggcggtgaagcagatgctggccgccatcgacctggacaaggaaagcacg
cagcttcgcgtcgacctcaaggagaccaactccgaggccaagcgcaagaagtacgtcaag
cgcctgaagatgatcgaatccttcaaggagggcggtgcccgtcctgaatggatgatcctc
gacgtcgtgccggtgatcccgcccgagctgcgcccgctggtgccgctggatggtggccgc
ttcgcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatcgagctgcgcgcgcctgatatcatcgtgcgcaacgagaagcgcatgctg
caggagtcggtggacgcgctgttcgacaacggccgccgcggccgcgccatcacgggtgcc
aacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgg
cagaacctgctgggcaagcgcgtcgattattccggccgttcggtgatcgtcgtcggtccc
gagatgaagctgcaccagtgcggtcttcccaagaagatggcgctggagctgttcaagccc
ttcatctattcgaagcttgagaagtacgggcacgccacgacgatcaaggcggccaagcgg
atggtcgagaaggagcgcccggaagtctgggacattctcgaagaagtcatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgagccg
gtgctggtcgagggcaaggcgatccagctgcatccgctggtctgcaccgccttcaacgcg
gacttcgacggcgaccagatggccgtgcacgtgcccctgagcctcgaggcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgtcgcaggacatcgttctgggcctctactacctctccctggagacgccggaa
ttccgcgtcgcccagaaggagctggaggagatccgcgccgccatcaccggcgccaacggc
aagtccgtggacgcgctgacgggcgccgagcggaaggccctggagcaccgcccgcatgtc
ttcggcgacctgggtgaggtggagcaggcgctggccgccggcgccatcaacctgcacacg
gccgtcatggcccgcgtggcggccccgaccgaggacaatccccggcgccatgagacggtg
ctgaccaccgctggccgcatgatgatgggcgcgctgctgccgcgcgacccccgcacgccc
tacagcctggtcaaccgccagctgaccaagaagtccatctcggacgtcatggacgcggtc
taccgtcactgcggccagaaggagtcggtgatcttcgccgaccgcctgatgtccctgggc
ttcaagcaggcggccaaggccggcatttccttcggcaaggacgacatgcagatccctgcc
gagaaggaagggctgattgcggctaccaagggcgaggtgaaggagttcgagcagcagtat
ctcgatggcctgatcacggccggcgagcgctacaacaaggtggttgacgcctggtcgcgc
tgcacggacgaggtcgccaccgcgatgatgaaggagatctcccgtcaggaggtcggccgc
gtcaccaacagcgtctggatgatgtcgcattccggtgcccgtggctcgccggcgcagatg
cgccagctggccggcatgcgcggcctgatggccaagccgtcgggcgagatcatcgagcag
ccgatcatcgcgaacttcaaggaaggcctgtccgtcctggagtatttcaactcgacccac
ggtgcccgtaagggcctcgcggataccgcgttgaagaccgcgaactccggctacctgacc
cgccgcctggtggatgtggcgcaggactgcatcatcgtcgagaatgattgcggctccgag
cgcggcatcaccgtgcgcgccgtgatggatggcggtgagacggtctcctcgctttccgag
cggatcctgggccggacgatccagcgcgacgtggtggacccggagacgggcgagatcctc
ttcccgcgcaacacgctggtcgatgagccggccgccgaggcgatcgagaagtcgggcgtc
gaggaagtctatatccgctccgtcctcacctgcgaggcacgctccggcgtctgcggccat
tgctatggccgcgacctggcgcgcggcacgccggtgaatatcggtgaggccgtgggcgtc
atcgccgcgcagtcgatcggcgagccgggcacgcagctgaccatgcgtaccttccacatc
ggcggtgcggcgcagcgtggcgccgagcagtcggcggtggaggccaccggcgacggtacc
gtctccgtgctgaaccgcgtggtggtgcagaacagccagggcaaccccatcgtgatgtcg
cgtaactgcgagatcgtgctgagcgacgccaatggccgtgagcgcgcccgctaccgcgtg
ccctatggtgcccgcctgctggtgctggaggacggcctggccgtcacccgcggccagaag
ctggccgaatgggaccccttcaccctgccgatcatcaccgagaaggggggtatcatcgaa
tacgccgacctgatcgagggcgtgacgctggtggagcggcaggacgaggtgaccggcctc
tcctccaaggtggtggtggactacaagcaggcggcccgtggcgccgatctgcgtccgcgc
atcatcctgaaggacgagcggggcaatatcgtcaagctcgcgaatggcgccgaggcccgc
tacttcctgtccccggactcgatcctgtccgtcgacaacggcgcgcaggtccaggccggt
gacgtggtggcccgcctgccgcgtgaatcctccaagacccgcgacatcacgggcggtctg
ccgcgcgtggccgagctcttcgaggcccgccggccgaaggatcacgcgatcatcagcgag
atcgacggccgcgtggaattcggcaaggactacaaggccaagcgccgcatcctggtggtg
ccggagcaggtgggcgacgagccccccgtgccgcgcgaatacctggtgcctaagggcaag
cacgtgtccgtgcaggaaggcgactacgtcaaggccggcgacccgctggtggacggcccc
cgcgttccgcacgacatcctgcgcgtgctgggcgtcgaggcgctggccaactacctggtc
aacgagatccaggacgtctatcgactgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtcgagatcatcgagcctggcgatagcacctac
ctcgtgggcgagacggtcgagcgcatcgagttcgagatcgagaacgagaagctcgtcgcg
aacaaggagcgtccggcgcgggctgagccggtgctgcagggcatcaccaaggcctcgctg
cagacgaccagcttcatctcggccgcctccttccaggagacgaccagggtgctgacggag
gcggcggtggccggcaaggtcgacttcctggccggtctgaaggagaacgtgatcgtcggg
cgcctgatcccggcgggcacgggctccgtgatgaaccgcctccgcgcgctggctgcccag
cgtgacagccagcgactgccgcagagccagacggctctgcccaagtcgggggctcaggcg
gcggaatga
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