Roseomonas marmotae: IAI58_05895
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Entry
IAI58_05895 CDS
T08030
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rmt
Roseomonas marmotae
Pathway
rmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IAI58_05895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmt03019
]
IAI58_05895
Messenger RNA biogenesis [BR:
rmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IAI58_05895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QTI80281
LinkDB
All DBs
Position
1243778..1245436
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AA seq
552 aa
AA seq
DB search
MNLITGDLAFIPLGGAGEIGMNLNVYRCDGQLLAIDCGIGFGGNDNPEAEVMTPDPAWLA
QRRDKLVGMVITHAHEDHVGAVAHLWPQLRCPVYASPFTASVLRRKLSEANLAHQVPLHI
IPLGGQVQLGPFDLTFIRVTHSVPEPQSIAIRTHYGTVLHTGDWKLDPDPLIGQPADLDA
FARLGQEGVLAMVCDSTNAMVEGSAGSEAEVRRNLVPLLRPLKGRVAITCFATNLARVES
IALAAQKVGRRVALFGRSLRNVEASARECGYLQSIPSFISEDEADDLPDNELLIICTGSQ
GEERSAMAKIAADTHPRISLGEGDTVIFSSRMIPGNEKAVLRMQDELTRGGCKVMTADDH
MVHVSGHACRDELRKLYSLVKPRYAVPVHGEWRHLQEHASLAREMGSTPILVEDGDMLRL
APLSGNGAPDVVEGVPTGRLVVDGERLLPLDGAVLGARRRMLFNGIVVASLAVDRSGRVM
GTPQVSAPGLFDMTDHEPEQLAADLARSVTELPANLRAEDDTLREAARAALRKALGRRLR
KRPSVEVHLLRV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgatcactggcgaccttgccttcattccgctcggcggggcgggcgagataggc
atgaatctgaacgtctatcgttgcgacgggcagcttctggcgattgactgcggcatcggc
ttcgggggtaacgataatcccgaggccgaggtgatgacccccgatcccgcctggctggcg
cagcggcgtgacaagctggtaggcatggtcatcacccatgcccatgaggatcatgtgggc
gcggtggcgcatctctggccgcagctgcggtgccccgtctatgcctcgcccttcacggcc
tccgtcctgcgccgcaagctgtccgaggcgaatctggcccatcaggtgccgctgcacatc
atcccgctgggcgggcaggtgcagcttggccccttcgacctgaccttcatccgcgtcacc
cattcggtgccggagccgcagtcgatcgccatccgcacgcattacggcacggtgctgcat
accggcgactggaagctggacccggaccctctgatcggccagcccgccgacctggacgcc
ttcgcccggctgggccaggaaggcgtgctggcgatggtctgcgacagcaccaacgccatg
gtcgaaggcagcgcgggcagcgaggccgaggtgcggcgcaacctggtgccgctgctgcgg
ccgctgaaggggcgggtggccatcacctgcttcgccaccaatctggcccgcgtcgaatcc
atcgcattggcggcgcagaaggtcgggcgccgggtcgcgctcttcggccgcagcctgcgt
aatgtcgaggcatcggcgcgcgaatgcggctacctgcagagcatcccctccttcatcagc
gaggatgaggccgatgacctgccggataacgagctgctgatcatctgcaccggcagccag
ggcgaggagcggtcggcgatggccaagatcgccgccgatacccatccccgcatctcgctg
ggcgagggggataccgtcatcttctcctcccgcatgatccccgggaacgagaaggccgtg
ctgcggatgcaggatgagctgacgcgtggcggctgcaaggtcatgaccgccgacgaccac
atggtccatgtctccggccatgcctgccgggatgagctgcgcaagctctattccctggtg
aagccgcgctatgccgtgccggtgcatggcgagtggcgccacctgcaggaacacgcctcc
ctggcgcgggagatgggcagcaccccgatcctggtcgaggatggcgatatgctgcgcctc
gcccccttgtccggcaatggggcgccggatgtggtggagggcgttcccaccggccgcctg
gtggtggatggcgagcggctgctgccgctggatggcgccgtgctgggcgcgcggcggcgg
atgctcttcaatggcatcgtcgtcgcctccctggcggtggaccggtccggccgcgtcatg
ggcacgccgcaggtttccgcccccggcctcttcgatatgacggatcatgagcccgagcag
ctggccgccgatctggcgcgtagcgtgacggaactgcccgccaacctgcgggccgaggac
gacacgctgcgggaagcggcgcgcgcggcgctccgcaaggcgctcggccgccggctccgc
aagcgcccgagcgtcgaggtgcatctgctgcgggtctga
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