Roseomonas marmotae: IAI58_10855
Help
Entry
IAI58_10855 CDS
T08030
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rmt
Roseomonas marmotae
Pathway
rmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IAI58_10855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmt03019
]
IAI58_10855
03009 Ribosome biogenesis [BR:
rmt03009
]
IAI58_10855
Enzymes [BR:
rmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IAI58_10855
Messenger RNA biogenesis [BR:
rmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IAI58_10855
Ribosome biogenesis [BR:
rmt03009
]
Prokaryotic type
rRNA helicases
IAI58_10855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTI78208
LinkDB
All DBs
Position
2291079..2292737
Genome browser
AA seq
552 aa
AA seq
DB search
MPFSDSLPAVLLRALHERGYDEPTSVQSAVLDAETRGRDLLVSAQTGSGKTVAFGLAIAP
DLMGEADHLPQARTPLALVVAPTRELALQVKTELAWLYAPAGGRVVSCVGGMDPVAERRA
LSQGAHIVVGTPGRLRDHLERGNLVPDALRAVVLDEADEMLDLGFREELEAILDAAPEGR
RTLLFSATVPRAIAVLAESYQRDALRIAASQEGGQHGDIEYKVAVVAPHDVERAVVNLLR
ASDSPRAIVFCSTRAAVARLHGNLNERGFLAVALSGELTQAERSRALQGLRDGKARVCVA
TDVAARGIDLPDLGLVIHAELPKEPETLLHRSGRTGRAGRKGVSVLVVPASRRRIAERLL
AAARLKATWGEAPNAEEIRAQDAERLAVEAKALAAEEPTAEELEAARALLAESSAEALAA
ALLRVLRAPLPAAEELSPVVEDRRPPRAPRATQEGEGAWFRMNVGRDGQADPRWILPFLC
RRGHVARDEIGRIRILGRETRFEVAGHAAARFAAAARRPDPAEPHIRVEPLPPGAGEDHG
RRQEGRQRRHSH
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgccgttttctgactccttgcccgccgtgctgctgcgcgccctccatgagcgcggatat
gacgagcccacttcagtccagtccgctgtactcgacgccgagacacgtggccgcgacctg
ctggtctcggcgcagaccggatcgggcaagaccgttgccttcggtctggccatcgcgccc
gacctgatgggcgaggccgaccacctgccgcaggcccgcacccctctggccctggtggtg
gcgccgacgcgtgaacttgccttgcaggtgaagaccgaactcgcctggctctatgcgcct
gcgggtggccgggtggtcagctgcgtcggcggcatggacccggtcgccgagcgccgggcg
ctctcgcagggcgcgcatatcgttgtcggcacccccggccgcctgcgcgaccacctggag
cgcggcaacctcgtgccggatgccctccgcgccgtggtgctggacgaggccgacgagatg
ctcgacctcggtttccgggaggagcttgaggccatcctggacgcggccccggaagggcgc
cgcaccttgctcttctcggccaccgtgccgcgcgcgatcgcggtgctggccgagagctac
cagcgtgacgcgctgcgtatcgctgccagccaggaaggcgggcagcacggcgatatcgaa
tacaaggttgccgtagtggcgccgcatgatgtcgagcgcgccgtcgtgaacctgctgcgc
gcctccgattccccgcgtgccatcgtcttctgctcgacccgtgccgccgtggcgcgcctg
catggcaacctgaacgagcgcggctttctggccgtggccctctcaggcgaattgacgcag
gctgagcgcagccgcgccttgcaaggcctgcgcgatggcaaggcgagggtctgcgtcgcc
accgatgtggcggcgcgtggcatcgatctgccggatctcggcctggtcattcacgccgaa
ctgcccaaggagccggagacgctgctgcatcgcagtggccgcaccggccgcgccgggcgg
aagggcgtcagtgtcctggttgtccccgcgagccgccgccggatcgcggagcgtctactg
gccgccgcccggctgaaggcgacctggggcgaggctccgaacgccgaagagatccgtgcc
caggatgccgagcggctggcggtggaagccaaggccctggctgccgaggagcccacggcc
gaagagctggaagccgcccgggcgctgctggctgaaagcagcgcggaagcactggcggcg
gcactgctgcgcgtgctgcgcgcgccccttccggctgccgaagagctgtctccggtcgtt
gaggaccgccgcccgccgcgcgcgccccgcgccacgcaggaaggtgagggcgcctggttc
cgcatgaatgtcgggcgcgatggccaggccgatccgcgttggatcctgcccttcctttgc
cgccgcggccatgtggcgcgggacgaaatcggccgtatccgcattctcgggcgtgagacg
cgattcgaagtggccggccatgccgctgcccgcttcgccgccgcggcgcgccggccggat
ccggccgagccgcacattcgcgtcgagccgctgccgccgggtgccggtgaggaccacggc
cgccgccaggaaggccgccagcgccgccattcccactga
DBGET
integrated database retrieval system
