Roseomonas marmotae: IAI58_14980
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Entry
IAI58_14980 CDS
T08030
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rmt
Roseomonas marmotae
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmt03032
]
IAI58_14980
03400 DNA repair and recombination proteins [BR:
rmt03400
]
IAI58_14980
Enzymes [BR:
rmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IAI58_14980
DNA replication proteins [BR:
rmt03032
]
Prokaryotic type
DNA Topoisomerases
IAI58_14980
DNA repair and recombination proteins [BR:
rmt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IAI58_14980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QTI78932
LinkDB
All DBs
Position
3187982..3189106
Genome browser
AA seq
374 aa
AA seq
DB search
MLTEAAAKVEPPRPPAGIPPSRAEEAEAAAAAGLRYVSDDGPGIRRRRSGGGFAYRDDKG
AAIREKATLQRIRKLAIPPAWTDVWICLRANGHIQATGRDAKGRKQYRYHPEWRAARDAT
KYEHVMEFAHALPGIRRRVDEDMALRGLGREKVLATVVHLLDTTLIRVGNEDYAQANKSY
GLTTLRTRHVAVEGAELRFEFKGKSGKMWKLRLRDRRVAKVVRACQDLPGQELFQYLGED
GERQSVTSADVNAYLREISGHDITAKDFRTWAGTVLAAMALSEFETFDSATAAKRNMKAA
IEHTASRLGNTPAICRKCYVHPEVLDSYMQGGLLVQVKQEIEAELRQELPDLKPEEAAVL
AFLRARLARAMNGG
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgctgactgaagccgccgccaaggtcgagccaccacggccaccagccggtatcccgccc
agccgcgcggaggaggcggaagccgccgccgccgcagggctgcgctatgtctccgacgac
gggccgggcatccgccgccggcgcagcggcggcggcttcgcctatcgcgacgacaagggc
gcggcgatcagggaaaaggccacgctgcagcgcatccgcaagctggccattccaccggcc
tggaccgatgtctggatctgcctgcgtgccaacgggcatatccaggccacaggccgcgac
gccaagggacgcaagcagtatcgctaccacccggaatggcgggcggcgcgggatgcgacg
aagtacgagcatgtcatggaattcgcccatgccctgcctggcatccgcaggcgagtggac
gaggacatggccctgcgcgggctggggcgggagaaggtgctggccaccgtcgtgcatctg
ctggacaccacgctgatccgcgtcggcaatgaggattacgcccaggccaacaagagctat
ggcctgacgacgctccgcacccgccatgtggcggtggagggcgccgagctgcgcttcgag
ttcaaaggcaagagcggcaagatgtggaagctgcgcctgcgcgaccggcgcgtggcgaag
gtggtgcgcgcctgccaggacctgccgggccaggaactgttccagtatctcggcgaggat
ggcgagcggcagagcgtcacctcggccgatgtgaacgcctatctgcgggagatcagcggg
cacgacatcaccgccaaggatttccgcacctgggccggcacagtgctggccgccatggcg
ctcagcgagttcgagacgttcgacagcgcgacagccgcgaagcgcaacatgaaggcggcg
atcgagcatacggcgtcgcggctgggcaatacgccggcgatctgccgcaaatgctatgtc
catccggaagtgctggacagctacatgcagggcggcctgctggtgcaggtgaaacaggag
atcgaggccgagctgcgccaggagctgccggacctgaaaccggaggaagccgccgtcctg
gccttcctgcgggcacggctggcccgggcgatgaacggcggctga
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