Roseomonas marmotae: IAI58_21035
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Entry
IAI58_21035 CDS
T08030
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rmt
Roseomonas marmotae
Pathway
rmt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IAI58_21035 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmt03021
]
IAI58_21035 (rpoD)
Transcription machinery [BR:
rmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IAI58_21035 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_ner
Sigma70_r1_2
Metal_resist
CysS_C
Motif
Other DBs
NCBI-ProteinID:
QTI81835
LinkDB
All DBs
Position
p1318-4:complement(114206..116008)
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AA seq
600 aa
AA seq
DB search
MDGMFTQATMDQDEVENEPALRARTGAFENFHDGAWGRREGDTPAAAPSNWVGEDDEGQP
EPDEELNETEEAEEGTEASTEDGAATTARESQGSDGNVDEASMSRTDDPVRMFLREMSGT
DLLTREAEIAVAQRIEAGRDDMLAGLCEHPGTFTMLTSWYDSMMQGQVPLRDMVEVEAMA
AADAAASVETSPEGDEAEPGLHSTLEEKMKPEVLASFEALFAARARLPEASAEEARELRR
ELATLLANVHLRPARLDQLVATVREAKRKLMALDGRASRAAQGCGVSATDFMRIWDGGEA
AIPGVLKLEKPRRRGAPVINLAAELKGVRAEIAKLEVENGLSAPRLREVCNAVAQGERQM
RRAKEELVQANLRLVVHIAKRYRNRGLMFGDLIQEGNIGLMRAVEKFDWRRGFKFGTYAT
WWVRQAITRSIADQSRTIRVPVHMTETAAKVARTSRRFAQKAGREPTPEELAGELGMSPD
KVRTVQRLAREPISLEAPIGEEDDGRLGDLIEDENAVMPFDAAARSSLRDAATSVLSGLS
PREERILRMRFGIGAENEHTLEEVGRTFNVTRERIRQIEAKALKKLQQSRRGRALRSFLA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgggatgtttacgcaggcaacgatggatcaggacgaggtggagaacgagcccgcg
ctccgcgcccggacgggtgccttcgagaatttccacgatggggcctggggtcgccgcgag
ggagatactcccgcggccgcgccaagcaactgggtcggcgaggatgacgagggtcagccc
gagcccgacgaggagctgaacgagaccgaggaggccgaagaaggcaccgaagcctcgaca
gaggacggcgcggccaccacggcgcgcgagagccagggctcggacggcaacgtcgacgaa
gcctcgatgagccgcaccgatgacccggtgcgcatgttcctgcgcgagatgagcggcacg
gacctgctgacccgtgaggcggagatcgccgtcgcgcagcggatcgaggccggccgcgac
gatatgctggcggggctctgcgagcatcccggcactttcaccatgctgacctcctggtac
gactccatgatgcagggccaggtgccgctgcgtgacatggtggaggtcgaggccatggcg
gccgccgatgcggcggcttccgtcgagaccagccccgagggggatgaggccgagcctggc
ctgcattccaccctcgaggagaagatgaagccggaggtgctggcttccttcgaggcgctc
ttcgccgcccgcgcacgcctgccggaggcttccgccgaggaagcgcgggagctcaggcgc
gagctggcgaccctgctggccaatgtgcacctgcgcccggcccggctggaccagctcgtc
gccacggtgcgggaagccaagcgcaagctgatggcgctggacggtcgcgcctcgcgcgcc
gcgcagggctgcggcgtctcggccaccgacttcatgcggatctgggacggcggcgaggcc
gcgattcccggcgtgctgaagctggagaagccgcgccgccgtggtgccccggtgatcaac
ctggccgcggagctgaagggcgtccgtgccgagatcgccaagctggaggtcgagaacggc
ctgtcggccccgcgcctgcgcgaggtctgcaatgccgtggcccagggcgagcgccagatg
cgccgcgccaaggaggagctggtccaggccaatctccgcctcgtggtgcatatcgccaag
cgctaccgcaaccgcggcctgatgtttggcgacctgatccaggaaggcaatatcggcctg
atgcgcgcggtcgagaagttcgactggcgccgtggcttcaagttcggcacctacgccacc
tggtgggtccggcaggcgatcacgcgttcgatcgccgaccagtcccgcaccatccgcgtc
cccgtgcatatgacggagacggcggccaaggtggcgcgcaccagccgccgcttcgcccag
aaggccggccgcgagccgacgccggaggagctggcgggcgagctgggcatgtcgccggac
aaggtccgcacggtgcagcgcctggcgcgcgagccgatcagcctggaagcgccgatcggc
gaagaggatgacggccgcctgggcgacctgatcgaggacgagaacgcggtgatgcccttc
gacgcggcggcccgttccagcctgcgtgacgcggcgaccagcgtgctttccggcctcagc
ccgcgtgaggagcgcatcctgcgcatgcgcttcggcatcggtgccgagaatgagcatacg
ctggaagaggtgggccgcaccttcaacgtgacccgcgagcgtatccgccagatcgaggcg
aaggcgctgaagaagcttcagcagtcccggcggggccgggcgctgcgctcctttctggcg
taa
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