Rothia mucilaginosa: RMDY18_00060
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Entry
RMDY18_00060 CDS
T01144
Name
(GenBank) type IIA topoisomerase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rmu
Rothia mucilaginosa
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmu03032
]
RMDY18_00060
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_00060
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RMDY18_00060
DNA replication proteins [BR:
rmu03032
]
Prokaryotic type
DNA Topoisomerases
RMDY18_00060
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RMDY18_00060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
DUF6306
Motif
Other DBs
NCBI-ProteinID:
BAI63838
UniProt:
D2NQB2
LinkDB
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Position
8180..10828
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AA seq
882 aa
AA seq
DB search
MRNEKVMSEEQQNKSTEVDVVSNGGAENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRA
LPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLI
QSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKMAPIALEMVRDINEDTVDFQPNYDGKS
LEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNLREVAEGVEWFLKNPHATNDELLNALM
ARIKGPDFPTGAQILGTKGIEDAYRTGRGSITMRAVVNVEEIHGRTCLVVTELPYQANPD
NLAIKIAELIKDGKVTGIADLRDETSGRTGQRLVIVLKRDASPKVVLNNLYKHTQLQENF
SANMLAIVDGVPRTLSLDAFVRHWVDHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDAL
DEVIALIRRSPTADEARSGLMEFLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRM
IAEYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTI
TRGGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAK
GYELQEAGRDAKGQHIANLLEFQGGEHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDY
DTNRTAGLIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPMGRSTSGV
TGMKFREGDELISANVVTEGSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRG
ALVGGLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQD
RQLDDSDDETTENTEASESSEAPGTDNEGEAAAADLTATGGN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
ttgaggaatgagaaagtaatgagcgaagaacagcagaataaatccactgaggttgatgta
gttagcaacggtggcgctgaaaatgtagaccaccacggtcacattgaacaggtggacctg
cagactgaaatgcagcgttcctacctggactacgcaatggcggttattattggccgcgcc
ctgccggatgtacgtgacggcctcaagcccgtgcaccgccgcgtgatctacgcgatgtac
gacggcggctaccgcccggaccgatccttcaataagtgcgcccgcgtggtcggcgacgtg
atgggtcagttccacccccacggcgatagcgctatctacgacactctggtgcgcctgatt
cagagctggattatgcgttacccgctggcactgggccagggtaactttggatcccccggt
aacgacggtgccgcagcgcctcgatacaccgagaccaagatggctcccatcgcccttgag
atggtgcgtgacatcaacgaagacaccgttgatttccagcccaactacgacggcaagtcc
ctggagcctaccgttctgcccgcgcgcatcccgaacctgctggtcaacggttcttcgggt
attgctgtgggtatggcgaccaatattccgccgcataacctgcgtgaggttgccgagggt
gtggagtggttcctgaagaacccgcacgccaccaatgatgagctgctgaacgctctgatg
gcgcgcattaagggccccgatttcccgaccggtgcacagattctgggcaccaagggcatt
gaggacgcgtaccgtactggccgcggctctatcaccatgcgcgcggtggtcaacgtggag
gaaatccacggtcgtacctgcctggtggtcaccgagctgccgtaccaggcaaacccggat
aacctggcgattaagattgctgagctcatcaaggacggtaaggtcaccggcatcgcggat
cttcgcgatgagacttcgggccgtaccggtcagcgcctggtgattgtgctcaagcgtgat
gcttccccgaaggttgtgctgaacaacctgtacaagcacacccagctgcaggagaacttc
tccgcgaatatgctcgccattgttgatggtgtgccgcgtaccctgtccctggacgcgttt
gtgcgtcactgggtggatcaccagatggacgttatcgttcgtcgtacccgttaccgtctg
cgtcaggcggaggaagaggcgcacatcctgcgtggcctgctgaaggctctggatgctctg
gatgaggttattgccctgattcgccgctcccccaccgctgatgaggcgcgtagcggcctg
atggagttcttgcagattgatgaggctcaggctcaggcaattctgaacatgcagctgcgt
cgtctggctgctctggagcgtcagaagattcaggatcgccacgatgagctgatgcgtatg
atcgctgagtacaacgcaatcatcgcctccgagacccgccagcgcgagattatctctgag
gagctgggcgagattgtgaaccgctacggcgatgagcgtcgcacccagattatgtacggc
tacaacggcgatatgtccatggaagacctcatccccgaggaggaggtcgtggtgacgatt
actcgcggcggctacattaagcgcacccgcagtgatcagtaccgtagccagcatcgcggc
ggtaagggcattaagggtgcctcgctacgcggtgatgacgtggtggagcacttctttgtg
accactacgcacagctggattctgttcttcacgaacctgggccgcgtgtaccgtgcgaag
ggttacgagctgcaggaggccggccgtgacgcgaagggccagcacattgcgaacctgctg
gagttccagggcggtgagcatattgctcaggtgatggagctgaagagctacgaggatgct
gagtacctggtgcttgctactcgcggcggcatggtgaagaagagtcgcctgagcgattac
gatacgaaccgtactgccggcctgattgcgattaacctgcgtgagggcgatgaggttgtt
tcggcgtttaccgtgtcggctcaggacgatattctgctggtgtcgcgtaacggtatgtcg
ttgcgcttccacgctgatgatgcgtcgctgcgcccgatgggtcgctccacttccggcgtg
actggtatgaagttccgtgagggcgacgagctgatttctgcgaatgtggttactgagggc
tctttcgtctttgtggtcactgagggtggttacgcgaagcgtacgagcgtggatgagtac
cgcgtgcagggtcgtaatggttttggcattaaggttgctaagctagttgaggatcgtggc
gccctggtgggtggcctcattgtggatgaagaggacgaggtgctggtggttatggccagc
ggcaaggtcgttcgctcgaatgtgaatgaggttcctgcgaagggacgcgatactatgggt
gttatctttgcaaagcccggtaagggcgattctattattggtgttgcgcgcaaccaggat
cgtcagctggatgatagcgacgatgaaaccactgagaacaccgaggcttcggagtcttct
gaggcgcccggtacggacaacgagggtgaagcggcggctgccgatctcaccgctactgga
ggtaactaa
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