Rothia mucilaginosa: RMDY18_01880
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Entry
RMDY18_01880 CDS
T01144
Name
(GenBank) superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMDY18_01880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmu03019
]
RMDY18_01880
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_01880
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RMDY18_01880
Messenger RNA biogenesis [BR:
rmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RMDY18_01880
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RMDY18_01880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HTH_IclR
ResIII
RecQ_Zn_bind
MarR_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAI64020
UniProt:
D2NQU4
LinkDB
All DBs
Position
199360..201615
Genome browser
AA seq
751 aa
AA seq
DB search
MMEREHGASRRSDDPNHPPLERTMNPQQSASSPADSLRTDSLHADPLYAEAREVLRRLTG
VSDAEFHDGQYEAIRALVADRARTVVVQRTGWGKSAVYFISSLLLRARGMGPALIVSPLL
SLMRDQVEAASRAGVRAAMVNSANVTEWDEIRTRLEADELDVLLVGPERLNNPAFREQWL
PYLLPRLGLLVIDEAHCISDWGHDFRPDYRRIGSLIKSLPAGVPVLATTATANDRVSRDI
AEQLSTDAAPVYVIRGPLSRESLRLGVLTLPDEAQRIGWLLTHLNDLPGSGIIYTLTVSA
AEDTANALRASGYEVLAYTGKTDPDERLVAEQALKENRVKALVATSALGMGFDKPDLGFV
VHLGAPSSAVSYYQQIGRAGRGAANADVLLLPGREDRAIWEYFATASMPNEEQALAVLDA
LAQSPEGLSITALEARVQLRRSTLELLLKVLDVEGAVVKEGNYWRRTSSPWRYDNARYAA
VAQARVAEQNAMLEYERTSQCRMLFLAQQLDDASATACGRCDVCAGPWYPVEIPAEALQA
AQSSFNTVGVPLQPRRMWPSGLDQLMGADAPRGRIRPEEQAEPGYALARLSDMGYGTRLR
ELLATNELGEPVDSEVPADLGRACVKVLAAWEWSEAGRPVAVLTLPSPVRPRLAQSLGRG
LASVGRLVDLGQVSLVDEPRFFGGNSAFRCADVLRSYRVPAGVLDYVREHQCPVLLVSDV
VDSRWAFTAVARELRLVGASAVYPFSLATTH
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaagagagcacggcgcgtcgcggcgtagcgatgaccccaaccacccaccgttg
gagagaaccatgaacccccagcagtcagcatccagccccgcggactccctgcgcaccgat
tccctgcacgctgaccctctgtacgctgaagcccgcgaagtgttgcgtcgcctcaccgga
gtttctgatgctgagttccacgatggccagtacgaggcgattcgtgccctcgtcgccgac
cgagcccgcactgtggtggtgcagcgtaccggctggggtaagtccgcggtctacttcatc
tcctccctgctgttgcgtgcccgcggtatgggcccggcgcttattgtctccccgctactc
tccctgatgcgtgaccaggttgaggcggcatcccgcgcgggggtgcgcgctgccatggtg
aactccgcgaacgtgaccgaatgggatgagatccgcacccgcctcgaagctgacgagctt
gacgtgctgctggtgggccccgaacgcctcaataacccggcattccgcgagcagtggcta
ccgtacctgctaccgcgcctgggtctgctcgtcattgatgaggcgcactgtatctctgac
tgggggcacgatttccgccccgattaccgccgtattggttcgctcattaagtctctgccg
gcgggtgtgccggtgctagcgactaccgcgaccgctaatgaccgtgtgagccgcgatatc
gctgaacagctcagcactgacgccgcccctgtgtacgtaatccgcggcccgctatcccgc
gagtccctgcgcctgggtgtgcttaccctgcctgatgaggcgcaacgcatcggctggctg
ctcacccacctaaacgacctgcccggttccggcattatctacacgctgaccgtttctgcg
gcagaagataccgcaaacgctctgcgcgccagcggctacgaggtgctcgcctacaccggc
aaaactgacccggatgagcgcctggttgcagagcaggcgctcaaggaaaaccgggtgaag
gctcttgtggcaacgagcgccctcggcatgggttttgataagcccgatttgggttttgtg
gtgcacctgggcgcgccgtcgtctgcggtgagctactaccagcagatcggtcgggccggt
cgaggcgccgccaatgcggatgttctgctcctgcccggtcgtgaagaccgcgccatctgg
gagtactttgcgaccgcctccatgcctaacgaggagcaggcgctggcggtgcttgatgcc
cttgcccagtccccggaggggttgagcattaccgctttggaggcgcgcgttcagctgcgc
cgctccacgctggagcttctgctgaaggtactcgacgttgagggcgccgtcgtgaaggaa
ggcaactattggcgccgaacctcttcgccgtggcggtacgataacgctcgctatgcggcg
gtggcgcaggcgcgtgtggcggagcagaacgccatgctcgagtatgaacgtactagtcag
tgccgtatgcttttcctggctcagcagcttgatgatgcatccgctaccgcttgcggtcgt
tgcgatgtgtgcgcgggcccctggtacccggtggagatccccgctgaggcgttgcaggcg
gcacagagcagcttcaacacggtcggtgtgccgttgcaaccgcgtcgcatgtggccgagc
gggttggatcagctgatgggcgcggatgcaccgcgcggtcgtatccgcccggaggagcag
gctgagcccggttatgcgttggcgcgtctgagcgacatggggtacggcactcgcctgcgt
gagcttctggcgacgaacgagctgggtgagccggttgattctgaggttcctgccgatctg
ggtcgtgcctgcgtgaaggtgcttgccgcttgggaatggtctgaggcgggtcgtccggtg
gcggtgctgactctgccgtcgccggtgcgtccgcgcttggctcagtctctcggtcggggg
cttgcatcggtgggtcgcctggtggatttgggtcaggtgtctctggtggatgagccccgt
ttctttggcggtaatagcgcgttccgttgcgcggacgtgttgcgctcgtaccgggttcct
gctggggttctggactatgtgcgtgagcatcagtgcccggttctgctggtttctgatgtg
gtggattcgcggtgggcgtttactgcggtggcgcgtgagctacgactggtgggtgcttct
gcagtgtatcctttctctttggctactactcactag
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