Rothia mucilaginosa: RMDY18_03470
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Entry
RMDY18_03470 CDS
T01144
Name
(GenBank) topoisomerase IA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rmu
Rothia mucilaginosa
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmu03032
]
RMDY18_03470
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_03470
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RMDY18_03470
DNA replication proteins [BR:
rmu03032
]
Prokaryotic type
DNA Topoisomerases
RMDY18_03470
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RMDY18_03470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BAI64179
UniProt:
D2NRA3
LinkDB
All DBs
Position
369065..371851
Genome browser
AA seq
928 aa
AA seq
DB search
MPAQAKTGKALLIVESPSKVKTISSYLGEDYLVDSSMGHIRDLPQPSELPENLKKSPVGK
FAVNVEENFEPYYVVNPDKKKKVAELKRKLKEVDALYLATDGDREGEAIAWHLKEVLKPK
VPVYRMTFPEITREAIQRAFGELRDIDLHLVDAQETRRILDRIYGYEISPVLWRKVGRGL
SAGRVQSVATRLVVERERERMAFVAANYWDLSGRFLTAASEGFDAKLVAVDGNRIATGKD
FADNGTLNTSKVTHLNEEAARALAAALQSAAFSVRSVETKPYKRRPAAPFTTSTLQQEAA
RKLRFSSRVTMQVAQRLYENGYITYMRTDSVALSEQAISAARRQASELYGAEFVPSAPRV
YTSKSKNAQEAHEAIRPAGDTFRTPDAVRGSLSNDEFRLYELIWKRTVASQMADATGSTA
SVRLGAVASNGQDAEFAASGTVITFRGFLAAYEEGVDASRVAEREAKDAEKRLPNLTTGE
ALTAEAIEPAGHETLPPPRYTEASLVKTLDELGIGRPSTYAAVISTIMDRGYVNVRSGSL
IPSWIAFSVVRLLESSFGPYVNYEFTAQMEEDLDRIARGEESRVEWLGEFYFGGGSKRGL
KPIVDNLGEIDARSINSIPIADGIVLRVGKFGPYLEAEGTLDTETGELTEPIRANVPADL
APDELTEEKARELLEQGKSDGRVLGVDPVSGNQIVARDGRYGPYVTEVIEEMTEEQIQAY
LDAQPTEYYKNGKPKPKKKPKPAKPRTASLFKSMDLATVTLEQALQLMSLPRVLGTDAEG
VEITVQNGRFGPYLKKGTDSRSIGSEDEIFTITLEQALEIYSQPKQRGRAAAKPPLAELG
VDPVSEKKIVVKDGRFGPYITDGITNITVPRAESVESLTHERAVQLLADKRAKGPVKRKT
AAKKTTTAKKTTAKKTTTRKTAAKKTAE
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgctcaggcaaagaccggaaaagccctgctgattgtggagtctccctccaaggtc
aaaaccattagcagctacctcggcgaggactaccttgtcgactcgtccatgggccatatc
cgcgaccttccgcagccctccgaactgcccgagaacctcaagaagagccccgtcggcaag
ttcgctgtcaacgttgaagagaacttcgaaccctactacgtggtcaaccccgacaagaag
aaaaaggtcgccgaactcaagcgcaagctcaaagaagtagacgcactctacctggcaacc
gatggtgaccgcgaaggtgaagccatcgcatggcacctgaaggaagtcctcaagcccaag
gtacccgtctaccgcatgaccttccccgaaatcacccgggaagccatccagcgtgccttc
ggtgaactgcgcgacatcgacctgcacctggtcgacgcgcaggaaacccgccgcatcctc
gaccgcatctacggttacgaaatctcccccgtactctggcgcaaggtcggccgcggcctc
tccgcaggtcgcgtgcagtccgtcgcaacccgcctcgtcgttgagcgcgaacgtgaacgc
atggcattcgtcgccgccaactactgggacctgtccggacgcttcctgaccgcagcctcc
gagggctttgacgccaagctggtcgccgtagacggcaaccgcatcgccaccggcaaggac
ttcgccgacaacggcaccctcaacacctccaaggtcacccacctgaatgaggaagccgcc
cgcgcgctcgccgcagccctgcagtccgccgcgttctcggtacgttccgttgagaccaag
ccgtacaagcgccgcccggcagcgccgttcaccacctccaccctgcagcaggaagccgca
cgtaagctgcgtttctcctcccgcgtgaccatgcaggtggcgcagcgcctctacgaaaac
ggttacatcacctacatgcgtaccgactcggtggcgctgagcgagcaggcaatctccgcc
gcacgccgccaggcatccgagctgtacggcgcagaattcgtgccttccgcaccgcgcgtg
tacacctccaagagcaagaacgcgcaggaagcccacgaagcaatccgccccgcgggtgac
accttccgcaccccggacgctgtgcgcggctccctgtccaacgacgagttccgcctctac
gaactgatctggaagcgtaccgtcgcctcccagatggctgacgcgaccggttccaccgcc
tccgtacgcctgggcgccgtggcatctaacggccaggacgccgagttcgcagcatccggt
accgtcatcaccttccgcggcttcctcgccgcctacgaagagggcgttgacgcatcccgc
gtagctgagcgtgaggcgaaggacgctgagaagcgcctgccgaacctgaccaccggtgag
gcgctgaccgccgaggcgattgagcccgccggtcacgagaccctgccgcccccgcgctac
accgaagcgtccctcgtgaagaccctggacgagctgggcattggccgcccgtccacctac
gcggcggttatttcgaccatcatggaccgcggatacgtgaacgttcgttctggttcgctg
atcccgtcctggatcgcgttctccgtggtgcgcctgcttgaatccagcttcggcccctac
gtgaactacgagttcaccgcgcagatggaagaagacctcgaccgcatcgcacgcggcgaa
gaatcccgcgtcgaatggctgggcgagttctacttcggcggcggctccaagcgcggtctg
aagcccatcgtcgacaacctcggcgagattgacgcccgcagcatcaactccatcccgatc
gcggacggcattgtgctgcgcgtgggcaagttcggcccctacctggaagccgaaggcacc
ctcgacaccgagaccggcgaactgaccgaaccgatccgggcgaacgtacccgccgacctg
gcaccggacgaactgaccgaagagaaggcacgcgaactgctcgaacagggcaagtccgac
ggccgcgtgctcggcgtggacccggtctccggcaaccagatcgtggcacgcgacggccgc
tacggcccctacgtcaccgaagtcatcgaagagatgaccgaggagcagatccaggcatac
ctggacgcgcagccgaccgaatactacaagaacggcaagcccaagccgaagaagaagccc
aagcccgcgaagccgcgcaccgcctccctgttcaagtccatggacctggcgaccgtgacc
ctcgagcaggcgctgcagctgatgagcctgccgcgagtgctcggtaccgacgctgagggc
gtggaaatcaccgtgcagaacggccgctttggcccgtacctgaagaagggcacggactcc
cgctcgatcggcagcgaggacgaaatcttcacgattacgctggagcaggcgctggagatt
tactcccagccgaagcagcgcggccgtgcggcggctaagcctccgctggctgagctgggc
gtggacccagtcagcgagaagaagatcgtggtgaaggacggccgctttggcccgtacatc
accgacggtattacgaacattacggttccgcgtgcggagtcggtcgagtcgctgacccac
gagcgtgcggtgcagctgcttgctgacaagcgcgcgaagggcccggtcaagcgtaagacc
gccgcgaagaagaccaccacggctaagaagactaccgcgaagaagacgaccactcgtaag
accgcggcgaagaagaccgccgagtaa
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