Rothia mucilaginosa: RMDY18_04010
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Entry
RMDY18_04010 CDS
T01144
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMDY18_04010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmu03019
]
RMDY18_04010
03009 Ribosome biogenesis [BR:
rmu03009
]
RMDY18_04010
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RMDY18_04010
Messenger RNA biogenesis [BR:
rmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RMDY18_04010
Ribosome biogenesis [BR:
rmu03009
]
Prokaryotic type
rRNA helicases
RMDY18_04010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Rep_fac-A_C
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAI64233
UniProt:
D2NRF7
LinkDB
All DBs
Position
422225..424423
Genome browser
AA seq
732 aa
AA seq
DB search
MTENTATPAELNAEAETVVTTENITENTVESPAVEAEETIAEATAEAPAEETADKAEEEG
VRFTDLGLDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPAL
SRMAELADINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQL
AGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPD
SKQVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRV
LEVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDIL
VATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQ
IEKATRQKVEPMHMPTAEAVNETRKQRFAQQITETIESEDLSFFRQIIEDYENEHDTTAE
DIAAALAVIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRAHNDEGMVNYKLNVG
RSSRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRLRDTKIAGEF
INIRKDNGPKGGGGGRGFGGGRREGGYRGNREGGRDFGGRDNRREGGYRGNRDGGRDFGG
DRDFKRRDFGGKRNDRDFGGRDFGGRDNRRDGGYRGNRDGGRDFGGRDNRRDGGYRGNRE
GGRDFGGRGKRY
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
ttgactgagaatactgctaccccggccgaactgaacgccgaggcagagaccgttgtgacc
actgagaacatcaccgagaacaccgttgagagccctgctgtagaagcagaagaaaccatc
gcagaagctactgcagaagcacccgccgaagaaaccgccgacaaggctgaagaagaaggc
gtacgcttcaccgacctgggcctggacgcacgcgtcctggcagccctggaagaggtaggc
tacgagaagccgtcccccattcaggaacagaccatccccctgttgcttgagggccacgac
gtggttggtctggcacagaccggtaccggtaagaccgcagcattcgcgctgccggcactg
tcccgcatggctgaactcgccgacatcaacggcgtctcccgcgacacccaggttctggtc
ctggcacccacccgcgagctggctctgcaggttgcagaagccttctcctcctacgcaacc
cacatggaggacttcaccgtcctgcccatctacggtggctccccctacggcccgcagctg
gctggtctgcgccgcggtgcgcaggtcgtcgtcggtacccccggccgcgtgattgaccac
ctggaaaaggggtccctggacctgtccaacctgcagtacctggtactcgatgaagcagac
gaaatgctgcgcatgggcttcgccgaagacgtggaaaagatcctcgaaggcacccccgac
agcaagcaggttgccctcttctccgcaaccatgcccaactcgatccgcaagattgctcag
cagtacctgaacgacccccgcgaggttcgcgtcaaggctaagaccaccaccagctcaaac
atctcccagcgctacatgcaggtcatgcactcccacaagctggacgcaatgacccgcgtg
ctcgaggttgaaaactacgacggcatcattgtcttcgtgcgcaccaagaaggaaaccgag
gaagttgccgacaagttgaaggcacgcggtttcgcggcggcagcgattaacggtgacatc
ccccagcagctgcgtgagcgcaccgttgacgccctgcgtgacggccgcatcgacatcctc
gtggcaaccgacgtggcggcacgcggcctggacgttgagcgcatctccctggtcgtcaac
tacgacatcccccacgacaccgagtcctacgtgcaccgcatcggtcgtaccggtcgtgca
ggtcgcgaaggtgccgcaatcctcttcgtcaccccgcgtgagaagtacatgctgcgtcag
atcgagaaggcaacccgccagaaggtcgagccgatgcacatgcccaccgcagaggcagtg
aacgagacccgtaagcagcgcttcgcacagcagattaccgagaccatcgagtctgaggac
ctgagcttcttccgccagattatcgaggactacgagaacgagcacgacaccaccgctgag
gacattgcggccgcactggctgttatcgcccagcagggtcgccccttcttcctcgatgag
agcgaagatatcgcccacaagtcccgccccttctctgacgaagattcggatcgcggcggc
cgcaaggcaaagcgcgcgcacaacgatgagggtatggtcaactacaagctgaacgttggc
cgttcctcccgcgtgaccgcaggcgctattgtgggtgcattggctaacgagggtggcatt
aagggctcccagattggctccatcgacattcgccagcacttcaccattgttggcctgccc
gaggacctgccccgcgacttcttcgaccgtctgcgtgacaccaagattgctggcgagttc
atcaacatccgcaaggacaacggtcccaagggtggcggcggtggccgcggcttcggtggc
ggccgtcgtgagggcggctaccgtggcaaccgtgagggtggccgcgattttggcggtcgc
gataaccgtcgcgagggcggctaccgcggtaaccgtgacggtggccgcgacttcggtggc
gaccgcgacttcaagcgtcgtgacttcggtggcaagcgcaatgaccgcgacttcggtggt
cgcgacttcggcggccgtgataaccgccgcgatggtggctaccgtggcaaccgtgatggc
ggccgcgacttcggcggccgtgataaccgtcgcgatggaggctaccgcggtaaccgtgag
ggcggccgtgactttggcggccgcggcaagcgctactaa
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