Rothia mucilaginosa: RMDY18_08230
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Entry
RMDY18_08230 CDS
T01144
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RMDY18_08230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_08230
Enzymes [BR:
rmu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RMDY18_08230
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RMDY18_08230
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RMDY18_08230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Flg_hook
Motif
Other DBs
NCBI-ProteinID:
BAI64655
UniProt:
D2NSM9
LinkDB
All DBs
Position
888259..889338
Genome browser
AA seq
359 aa
AA seq
DB search
MEGTMPELPEVETVRAGIADHSLGRPVRAVRVVDARSLRRHLPGPAHFETALTGRALRGA
YRRGKYLWLTLSEADGTLADEALVVHLGMSGQLLVRDEPGGDSGSESGSDSGNESEARAA
FDEQPRHLRVALELGPVGATSVAGATGGAASANRANTGQRLLFVDQRIFGGMFLSPLVPD
VPAAVATNKVAPGEVPERFLVPEAVKHIARDPLDEFFDPAAVRRKFLRTSSGIKKVLLDQ
SVISGVGNIYADEALWRARLHYAKPARTLSAAQTRELLEAVTQVLRESLAAGGTSFDALY
VNVLGESGYFERSLNAYGRAGEPCHRCAEAGRTTLMVREPFQNRSSYRCPHCQRAPRSR
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
ttggagggaaccatgcccgaactgcccgaggtggaaactgttcgtgcgggcatcgccgac
cattcgttgggtcgccccgtgcgggcggtgcgcgtggtcgatgcccgttcgctacgcagg
cacctgcccggtcccgcccactttgagacggcactcaccggcagggcgctgcgcggtgcc
taccgccgcggcaagtacctgtggctgaccctgagcgaggcggacggcacgcttgccgac
gaggcgctcgtggtgcatctgggcatgagcggtcagctgctcgtgcgcgatgagccgggc
ggcgactcaggcagcgaatcgggcagtgactcgggtaatgaatctgaggctcgcgcggcc
tttgatgagcagccgcggcacctgcgcgtggcgctcgagctaggaccggtgggagctacc
agcgttgcgggagccaccggtggcgcggcgagcgccaaccgggcaaacaccgggcagcgg
ttgctcttcgtggaccagcgcatcttcggcggcatgttcctcagcccgctggtaccggac
gtacccgcagcggttgcaacgaataaagtagcgccgggtgaagtaccggagcgttttctg
gtacctgaagcggtcaagcacattgcccgcgacccgctggacgaattcttcgaccccgcg
gcggtgcgccgaaagttcctgcgcacctccagcggcattaagaaggtgctgctggaccag
tcggtcatctccggcgtgggcaatatctacgccgacgaggcgctgtggcgtgcgcggctg
cactacgcgaagcccgcacgcaccctcagcgccgcccaaacccgcgaactgctggaggcg
gtcacgcaggtgctgcgcgagtccctggcggcgggcggcacaagcttcgacgccctgtac
gtgaacgtgctgggcgagtcgggctactttgagcgctcgctgaacgcctacggccgggcc
ggggagccttgccaccgttgcgcggaggcgggccgcacaaccctgatggtgcgcgaaccg
ttccagaaccgttcgtcctaccgttgcccgcactgccagcgggcgccgcgttctcgctag
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