Rothia mucilaginosa: RMDY18_10440
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Entry
RMDY18_10440 CDS
T01144
Name
(GenBank) superfamily II RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rmu
Rothia mucilaginosa
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmu03019
]
RMDY18_10440
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RMDY18_10440
Messenger RNA biogenesis [BR:
rmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RMDY18_10440
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
SH3_HelY
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
HVO_A0261_N
MarR_2
MAP65_ASE1
Motif
Other DBs
NCBI-ProteinID:
BAI64876
UniProt:
D2NTA0
LinkDB
All DBs
Position
1142254..1145373
Genome browser
AA seq
1039 aa
AA seq
DB search
MLSEGLRRANRYTGHTMSKHHAQSDAHTSNASNEQTPAERTDYAAAYAASRERAAYAKTA
LGAFEASLDFPLDDFQRQACAAVEADRSVLVAAPTGAGKTIVGEFGIYLALRRGMKAFYT
TPIKALSNQKYHDFVRAYGEDYVGLLTGDTSINTEAPVVVMTTEVLRNMLYANSTTLTGL
GYVVMDEVHYLADRFRGAVWEEAIIHLPEHVNVISLSATVSNVEEFGAWLDTVRGGTDII
VSEHRPVPLWQHMMVGHRVVDLFVPEDNSAQGKNHTQGKNQEPEEKLSRKQAKKAQKAKH
RGATVEAGANPLLAGLRLNPQLKALRPGFRSSPGRGRYGGKRERFRHRREGWLNETFSSG
ERGRSDRRDRFSNDRFSNDRDFDARGEQKPLRPQRITRPEMVRALDKQGLLPAICFIFSR
AGCDGAVSHCVSADITLTTPEQQQTIRAYIAEATAHLDTRDLNTLGYYEWRDGLIRGIAA
HHAGLLPLFKEVVETLFTQGLIKLVFATETLALGINMPARTVILEKLTKYNGESHVDITP
GEYTQLTGRAGRRGIDIEGHAVVIWRPGMSPEHVATLASTRTYPLNSSFRPTYNMAANLI
ASYGAERTRKILESSFAQFQADKSVVGVASRVRKNESALEGYREAMACHLGDFTEYVQLS
RNIAELEKKASKSNERHARAQAHHSIQQLLPGDIIYIPHGRSRGYAVVITRSDSHADPRI
GILTEDAHQRTASTRDFEGAIEPVSRIKIPKRLSLKTAKERRDTASRMRQALYDGRAPRA
LAQQNIPARQNSIDAQLEALQAQLRNHPCHGCSDRANHMRWAERWQKLNSETEGLRRQIA
RRTNTIAQVFNRIARLLESYGYVERTEDGELSLTTGGQALRRIYGERDLLTALCLDAHFL
DGLEPAAIAATVAALTYQGKRDAVEYLAHYPHPSLRAPIATITQRLADLNAAEEQFKVNP
TPACDFGLVEPMYAWANGAHLAKAIEDTGLAAGDFVRWAKQVLDALDQIAHIRSLDPVIR
ARCEEAIEAVRRGVVALDV
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgctttctgaaggcttgcggcgggcgaaccgttacactggacatactatgagcaagcac
cacgcacagtccgacgcacacacttctaacgcttctaacgagcagaccccggcggagcgc
actgactacgctgccgcctacgccgcatcccgagagcgcgccgcctacgcgaagaccgcc
ctcggcgcttttgaggcgtcccttgattttccgctggatgattttcagcgtcaggcgtgt
gccgccgtggaggcggaccgctccgtcctcgttgccgcgcctacgggtgccggtaagacc
attgtgggtgagttcggtatctacctggcgttgcgccgcggcatgaaggcgttctacacg
acccccattaaggcgctgagcaaccagaagtaccacgactttgtgcgcgcgtacggtgaa
gattacgtgggtctgctgaccggcgatacgagcattaacacggaagcgcccgtggttgtg
atgaccaccgaggtactgcgcaatatgctctacgccaactcgaccacgctgactggcctg
ggctacgtggtgatggatgaggtgcactacctggcggaccgtttccgtggtgcagtgtgg
gaagaggcgattattcaccttcccgagcatgtgaacgtcatttctctgtcggcgacggtg
tcgaacgttgaggagttcggcgcgtggctggatacagtgcgcggcggcacggacattatt
gtttctgagcaccgcccggtgcccctgtggcagcacatgatggtcggtcaccgtgtggtg
gatctattcgtacccgaggacaactccgcacagggcaaaaaccacacccagggcaagaac
caggagccggaggagaagctctcccgcaagcaggcgaagaaggcacagaaggctaagcat
cgcggcgcaaccgtggaggcgggcgccaaccctctgcttgccggtctgcgcctgaacccg
cagctgaaggcgctacgccccggcttccgttcgagcccgggccgcggacgctacggcggc
aagcgtgaacgtttccgtcaccgccgtgaaggctggctcaatgagacgttcagcagcggc
gagcgcggccgctcggaccgtcgtgaccgtttcagcaatgatcgtttcagtaacgaccgg
gactttgatgcgcgcggtgagcagaagcccctgcgtccgcagcgcattacccgtccggag
atggtgcgcgccctcgacaagcagggcctgctgcccgcaatctgctttatcttctcccga
gccggttgcgacggcgcggtcagtcactgcgtatccgccgatattacgctgaccaccccc
gaacagcagcagaccatccgcgcctacatcgcggaagcgacagctcacctggacacccgc
gacctgaacaccctcggctactacgagtggcgcgacggcctgattcgcggtatcgccgcg
caccacgccggcctactgcccctcttcaaggaagttgtcgaaaccctcttcacgcagggc
ctcatcaagctggtcttcgccaccgaaaccctcgcactgggcatcaacatgcccgcacgc
accgtcatcctggagaaactcaccaagtacaacggcgaatcccacgtggacatcaccccc
ggcgaatacacccagctgaccggacgcgccggccgccgcggcatcgacatcgaaggccac
gccgtagtcatctggcgccccggcatgtccccggaacacgtggcaaccctcgcctcaacc
cgcacctacccgctcaactcctcattccgccccacctacaacatggcggcaaacctcatc
gcctcctacggcgccgaacgcacccgcaaaatcctggaatcctccttcgcacagttccag
gcagacaagtcggtcgtgggcgtcgcctcccgcgtacgcaaaaacgaaagcgccctagaa
ggctaccgcgaagccatggcatgccacctgggcgacttcaccgaatacgtccagctcagc
cgcaacatcgccgaactggaaaagaaagcgtccaagagcaacgaacgccacgcacgcgcg
caggcacaccacagcatccagcagctactacccggcgacatcatctacattccgcacggc
cgctcccgcggctacgcagtcgtcatcacccgctccgactcgcacgccgacccgcgcatc
ggcatccttaccgaggacgcgcaccagcgcaccgcctcaacccgcgacttcgaaggcgcc
atcgaaccggtctcacgcatcaaaatccccaagcgcctaagcctcaaaaccgccaaggaa
cgccgcgacaccgcaagccgcatgcgccaggcactctacgacggccgcgccccgcgtgcg
ctcgcacagcagaacatcccggctcgtcagaacagcattgacgcgcagctggaggctctg
caggctcagctgcgtaaccacccgtgccacggctgctccgaccgcgcgaaccacatgcgc
tgggctgagcgctggcagaagctcaactctgagacggaagggttgcgccgtcagattgcc
cgccgcaccaacacgatcgcgcaggtcttcaaccgcattgcgcgtctgctggaaagctac
ggctacgtcgagcgcaccgaagacggcgaattgtcgctaaccaccggcggccaggcgcta
cgccgcatctacggcgagcgcgacctgctgaccgccctgtgcctggacgcgcacttcctc
gacggactggaacccgccgccatcgcggcaaccgtcgccgcactaacctaccagggcaag
cgcgacgcggtggaatacctggctcactacccgcacccgtccctgcgcgcacccatcgcg
acgattacgcagcgcctcgccgacctgaacgcagccgaagaacagttcaaggtcaacccg
acccccgcatgcgacttcggcctggttgaacccatgtacgcctgggcgaacggcgcgcac
ctcgcaaaggcaatcgaggacaccggccttgccgccggcgacttcgtacgttgggcaaag
caggtactggacgccctggaccaaatcgcgcacatccgctcactggacccggtgattcgt
gcccgctgtgaagaagcgattgaggcggtacgccgcggcgtagtcgccctggacgtctag
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