Rothia mucilaginosa: RMDY18_12500
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Entry
RMDY18_12500 CDS
T01144
Name
(GenBank) type IIA topoisomerase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
rmu
Rothia mucilaginosa
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmu03032
]
RMDY18_12500
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_12500
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RMDY18_12500
DNA replication proteins [BR:
rmu03032
]
Prokaryotic type
DNA Topoisomerases
RMDY18_12500
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RMDY18_12500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
DUF4890
FliT
Motif
Other DBs
NCBI-ProteinID:
BAI65082
UniProt:
D2NTV6
LinkDB
All DBs
Position
1407730..1410255
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AA seq
841 aa
AA seq
DB search
MARRSKSAVSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRI
LYMMQQMGLRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGN
FGSLDDGPAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVN
GTTGIAVGMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGI
RDAYETGRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGIS
DVVDLTDRTNGLRLVIEIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLD
LMRVYIDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREK
LKVVFDLTDTQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILSSDAALRELVS
EELAEVAERYGTDRRTQLKTKDDMQVAIEAVTAQSKAKKSLGLALEIADDPCWVLLSASG
MMGRTPGKPIREALVDPGKRFKHDVFTSIVPTTARGEIGAVTSAGRMVRLSVMDIAVLDE
NGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVLALATAGGVIKRLNPDYPLNQTEWDI
MKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGIKLADGDRL
IALGVTAPGDAAEVVTVTNGKDGLASAKVTALSEYPQKGRATGGVRAHRFLTGESQLALA
WVGVGPAKAASSGGVARSLPTEHGARDGSGVMLTQSIGIVGPNYAAVSAAMAVSPEGEKL
F
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgatccaaatccgccgtcagcgactacccggtggatgtggtagagaatatc
gtcgacatcgacgtatccgctgagatggaaaccagcttcctggaatactcctactcggtg
atttattcgcgcgccctccccgacgcccgcgacggcctcaagcccgtgcagcgccgcatc
ctttacatgatgcagcagatgggtctgcgccccgacaagggccacgtcaagagcgcccgc
gtgaccggcgaggtcatgggtaagctccacccgcacggcgacgccgccatctacgacgcg
atggtgcgcctcgctcagcccttcgcgctgcgcctgcccctcgttgacggtcacggtaac
ttcggctccctcgacgacggcccggcagccgcccgatacaccgaagcacgtatggcgccc
gccgcgcaggcactcaccgcggacctcgaagaagacgtggttgacttcgtaccgaactac
gacaaccagttcatgcagccctccgtgctgcccgcagcgttcccgaacctgctcgtcaac
ggcaccaccggcatcgcggtcggcatggcaaccaacatggcgccgcacaacctgcgcgag
gttatcgccggtacccgccacctcatcgcccaccccgaggcgaccctcaaagacatcatg
aagttcatccccggccccgacctgcccaccggcggcaccatcgtgggtctgggaggcatt
cgtgacgcctacgaaaccggccgcggcaccttcaagacccgcgcaaaggtctcgatcgag
caggtcagcccccgcaagcagggcattgtcgtcaccgaactgccgtacatggtcggcccc
gaaaaggtcatcgaaaagatcaaggacggcgtcaactccaagaagctcaccggcatctcc
gacgtggtcgacctgaccgaccgcaccaacggtctgcgcctggtcatcgagattaagaac
ggcttcaaccccgaggcggtgctcgccgccctctacaagcacactccgcttgaggattcc
ttcggcatcaacaacgtggcgctcgtggacggtcagccgcagaccctcggcctgctcgac
ctgatgcgcgtgtacattgaccaccgcctgaacgtggtccgccgccgcaccgaattccgc
ctgggcaagcgcaccgaccgcctgcacctggtcgagggcctgctcgtggcgattctcgac
attgacgaggtcatccagatcatccgtgagtctgacgagaccgctcaggcacgcgaaaag
ctgaaggtcgtcttcgatctgaccgacacccaggcgaaccatatcctggagctgcgcctg
cgccagctcaccaagtactcccgcctggaactcgaggcagaacgcgacaccctgcagcag
gaaatcgcggagctgcagcgtatcctcagctccgatgcggcgctacgtgaactggtctcc
gaggagctcgccgaggtcgccgaacgctacggcaccgaccgccgcacccagctcaagacc
aaggacgacatgcaggtcgccattgaggcagtcaccgcgcagtccaaggcgaagaagagc
ctgggcctcgccctcgaaatcgcagacgatccctgctgggtgctgctttcggcctccggc
atgatgggacgcacccccggcaagcccatccgcgaggcgctcgtggatcccggcaagcgc
ttcaagcacgacgtgttcacctcgattgtgccgaccaccgcgcgcggcgagattggtgcc
gtcacctccgctggacgtatggtgcgcctgtccgtcatggacattgcggtgctggacgag
aacggcggcaccccctccatggcgtcggcggtgaaggccgccgagctggttcagctcgcc
aagggtgagaagctggtcgctctcgtaccgctgaacacggtgctggcgctggcaaccgcg
ggcggcgtgatcaagcgcctcaacccggattacccgctgaaccagaccgagtgggacatc
atgaagctcaaggacgacgacgaaatcgtagccgccgccccctgccccaccgatgatatg
gtgctcaccttcgtcactcgcgacgcgaagctactgaccttcgacgcggcaaaggtccgc
ccgcagggacgcaccggcggcggtatcgcaggcatcaagcttgccgacggtgaccgcctc
atcgccctgggcgtgaccgcgcccggcgacgcggcggaggtcgtgaccgtcaccaacggc
aaggatggcctggcgagcgccaaggtcaccgccctgagcgagtacccgcagaagggccgc
gcgaccggcggcgtgcgtgcgcaccgattcctcaccggtgagagccagctggctctggcg
tgggtgggtgtgggcccggcgaaggcggcgtcctccggcggtgtggctcgttccctgccg
accgagcacggtgcccgtgacggttccggtgtgatgctcactcagagcatcggcattgtg
ggcccgaactatgcggctgtttctgctgcgatggcggttagcccggagggtgaaaagctt
ttctag
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