Rothia mucilaginosa: RMDY18_13320
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Entry
RMDY18_13320 CDS
T01144
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03030
DNA replication
rmu03430
Mismatch repair
rmu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RMDY18_13320
03430 Mismatch repair
RMDY18_13320
03440 Homologous recombination
RMDY18_13320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmu03032
]
RMDY18_13320
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_13320
Enzymes [BR:
rmu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RMDY18_13320
DNA replication proteins [BR:
rmu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RMDY18_13320
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RMDY18_13320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAI65164
UniProt:
D2NU38
LinkDB
All DBs
Position
complement(1499462..1503004)
Genome browser
AA seq
1180 aa
AA seq
DB search
MATKEFTHLHVHTEYSMLDGAARLGDLFTYAKELGMKSMATSDHGFLFGAFDFWRQAKAH
DIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRAS
SIASLEGQLYKPRMDREVLQTYSKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIF
GKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQS
GSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPNF
PVPEGENEESWFVKEVEKGLHYRFPDGVPDKVRKQAEYEVGVITSMGFPGYFLVVADFIN
WAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVSMPDFDVDFDDR
RRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERLTKAMPPDVMG
KNIALANVYNEEDKRYAEAADLRALIDDPVDKIYGQVFETAKGLEGLKRQWGVHAAGVIM
SSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDAVENIKANRG
IDLDLESLPLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHISAVLALYRPG
PMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQVMAIAQKVANYTL
GEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLPFSDYAFNKAHTA
AYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVLAPDVNESTLT
FAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVPLQVCNKRTIESLI
KAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMDDALGDELTVTIPD
VPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGEDSHVRDGETVTIA
GMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFFSRAYETMGAALADDLICSIRGRVQ
RRDDGSVNMSAQELQILEISDDGRAAPITIVVPEYLVTEANLKELKETLRDHKGTADVRM
LVRTRDKEQLVLLDPSVRVEPNPSLFGEIKTIFGPSCIRR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaccaaagaatttacgcacctgcacgtgcacaccgagtactccatgctcgacggt
gccgcgcgcctgggtgacttgttcacctacgctaaagaactcggcatgaagtccatggcg
accagtgaccacggcttcctctttggtgccttcgacttttggcgccaggctaaagcgcac
gacatcaagcccatcattggtgtggaggcgtacctgacccccggcacgcaccgcaccgac
cgttcgcgtgtgcgctggggcgacggctcccgcgacgacgtctccggtggtggcgcgtac
acccacatgaccatgtgggctgaaactaccgagggcatgcacaacctgttccgtgcctcc
tcgattgcgtcgctggaaggccagctgtacaagccgcgtatggaccgtgaggtgctgcag
acctactcgaagggcctgattgcgaccaccggctgcccctccggcgaggttcagactcgc
ctgcgcctgggccagttcgacgaggcggtccaggcggcgagcgaattccgcgatattttc
ggtaaggacaacttctactgcgaggtcatggaccacggcctggacattgaacgcaacgtc
caggaggacctgcaccgcctcgccaagaagctgaacctgcccttcgtcgccaccaacgac
ctgcactacacccgccaggaagaccacaccgcccacgcggcgctgctgtgcgtgcagtcc
ggctcgaccctcaccgatcccaagcgcttcaaattcgacgcggataacttctacctgcgc
tcggcagaagaaatgtacgccctcttcggcgacattcccggcgcgtgcgagaacaccctc
gaaatcgctgaacgctgcaacgtggagttcaacaccaaggcgaactacatgccgaacttc
cccgtgcccgagggtgaaaacgaggaatcctggttcgtgaaggaggtcgagaagggcctg
cactaccgcttcccggacggcgtgcctgacaaggtgcgcaagcaggctgagtacgaggtg
ggggttattacctccatgggcttccccggctacttcctcgtggtcgccgactttatcaac
tgggctaagcgcaacggtattcgcgtgggtcccggccgtggctccggtgcaggctccatg
gtcgcgtacgcgatgcgtattaccgacctgaacccgctcgaccacgacctgattttcgag
cgattcctcaaccccgaccgcgtctccatgcccgactttgatgtggactttgacgatcgt
cgccgcggcgaagtcatcgactacgtgaccgaaaagtacggtgaagagaaggtcgcacag
atcgtcaccttcggcaccattaaggcgaagcaggcgctcaaggacgcctcccgcgtgatg
gaccagccgtactcggtcggcgagcgcctcaccaaggcgatgccgccggatgtcatgggt
aagaacatcgccctggcgaacgtgtacaacgaagaggataagcgttacgccgaggcggca
gatttgcgcgccctcattgatgacccggtcgataagatttacggccaggtgttcgaaacc
gcgaagggcctggagggcctgaaacgtcagtggggcgtgcacgctgcgggcgtgatcatg
tccagcaaggacctcgtggacgtgattcccgtgatgcgccgcgaggccgacggccaggtc
atcacccagttcgattaccccacctgtgagggcctgggcctgattaagatggacttcttg
ggtctgcgtaacctcaccatcatctctgatgcggtggagaacattaaggctaaccgaggc
attgacctggatcttgaatctctgccgctggatgacccggaatcctaccgtctgctggcg
cgtggcgacaccctcggcgtgttccagctcgatggcggcccgatgcgctcgctcctgaag
ctcatggagcccgaggagtttgagcacatttcggcagtgttggcgctgtaccgtccgggc
ccgatgggcgcgaactcgcacaccaactacgctctgcgtaagaacggtaagcaggagatt
gagccgattcaccccgagctggaagagccgctgaaggatattctggacaccacctacggc
ctgatcgtgtatcaggagcaggttatggcgattgctcagaaggtcgcgaactacactctg
ggtgaggcagacctgctgcgccgtgcgatgggtaagaagaagaaagcggagctggataag
cagtacgctaccttccacgacggcatgatttctaacggctactctgagggcgctattaag
gcgctctgggatattctgctgccgttctctgactacgcgttcaacaaggcgcacacggct
gcgtacggtctggtgtcgtactggacggcgtacctgaaggcgcattacccgcaggagtac
atggctgcgctgctgaccagcgtgggtgataacaaggacaagctcgcgctgtacctgaac
gagtgccgagccatgggcattaccgtgctcgcgccggatgtgaacgagtccaccctgacc
ttcgcccctgtcggtgacgatatccgcttcggtatgggcgcgatccgtaacgtgggcgcg
aacgtggtcgaaggcatgattgccgcgcgcgaggagaagggccgctacgagtccttcaac
gacttcctgaagaaggtgccgctgcaggtgtgcaataagcgcactatcgagtcgctcatt
aaggcgggcgctttcgacgacctgggccacacccgccgttcgctgtccctcattcacgag
gcggcagtggacgcggccgtggcggtcaaacgtaaggaagcggcgggtcagttcgacctc
ttcggctccctcggcatggatgacgccctgggtgatgagctgacggtgaccatccccgac
gtgcccgagtgggaccgccgtgagaagctgaactttgagcgtgacatgctgggcctgtac
gtttcggaccacccattgcgtggcctggaacgtgcgctctcggatgctgcaagccattcg
gtgcacgacatcatcggtgaagactcgcacgtgcgtgacggcgaaaccgtcaccattgcg
ggcatgctcaccggcgtttcgcgccgtatcgccaagtccagcggtaaccagtacgcctcc
gtggagctggaagacccctcgggcgcaaccattacggtcatgttcttctcccgcgcctac
gagacgatgggcgccgccctggcggacgacctcatctgctcgattcgtggccgcgtgcag
cgccgtgacgacggcagcgtaaacatgagcgcgcaggaactgcagatcctggaaatcagc
gatgacggccgcgccgcacccatcaccatcgtggtacccgagtacctggtgaccgaggcg
aacctgaaggagctgaaggagaccctgcgcgaccacaagggaaccgcggatgtgcgcatg
ctcgtgcgtacccgcgataaggagcagctggtgctgctggacccgagtgtgcgcgtggaa
ccgaacccgagcctcttcggtgaaatcaagacgattttcggtccgagctgcattcgacgc
taa
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