Rothia mucilaginosa: RMDY18_14680
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Entry
RMDY18_14680 CDS
T01144
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMDY18_14680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmu03019
]
RMDY18_14680
03016 Transfer RNA biogenesis [BR:
rmu03016
]
RMDY18_14680
Enzymes [BR:
rmu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RMDY18_14680
Messenger RNA biogenesis [BR:
rmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RMDY18_14680
Transfer RNA biogenesis [BR:
rmu03016
]
Prokaryotic type
tRNA degradation factors
RMDY18_14680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
S1_RRP5
KH_2
PCB_OB
aRib
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BAI65300
UniProt:
D2NNT2
LinkDB
All DBs
Position
complement(1648740..1650959)
Genome browser
AA seq
739 aa
AA seq
DB search
MEGPEIKFAEVEIDNGIHGKRHVRFETGRLAKQANGSVLVTIDDETTLLSATVVGKSPRD
GFDFFPLTVDVEERMYAAGKIPASYFRREGRPSTEAILAARLIDRPLRPAFTKGIRNEVQ
VVVTVLTYNPDEIYNTFAINAASASTTLSGAPFSGPIGGVRMALIDGQWVCFPKYSQLEN
AVFDMAVAGRIVTKADGTEDVAIMMVEAEATDNSWKLIKEDGQTAPTEEVVAQGLEAAKP
FIAALCKAQADLASRAGKPALELPFFGGHGEDVDAAVKEFAADRLVEVYSIAGKQEREAA
AAELQEELMEALTGEGKEFEERSNEVSVAFAALTKHVVRQRILTEQVRIDGRGLTDIRQL
TAEVEILPRVHGSALFERGETQIMGITTLNMLKMEQQLDSLHPVKSKRYIHHYNFPPYST
GETGRVGSPKRREIGHGALAERAITPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCAST
LSLLNAGVPLRAPVAGIAMGLVSDEVDGETRYAALTDILGAEDALGDMDFKVAGTSEFVT
AIQLDTKLDGIPASVLAGALTQAREARLHILEVLVSAIDAPDEMSEFAPRIISVKIPVAK
IGEVIGPKGKMINQIQEDTGADISIEDDGTVYIGAADGPSAEAARAAVNAIANPQVPEVG
ERYLGTVVKVTDFGAFISLTPGKDGLLHISEMRKLNGGKRVVDAEDVVSVGQKVQVEITK
IDDRGKLSLAPVVEGGDDE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggaaggtcccgaaatcaagtttgctgaagtcgaaatcgacaacggcattcacggtaag
cgccacgtgcgctttgaaaccggccgtctcgccaagcaggctaacggctcggtgctcgtc
actatcgatgacgagaccaccctgctctccgcaaccgtggtcggcaagtctccccgcgat
ggcttcgacttcttcccgctgaccgtggacgtggaagagcgcatgtacgcagccggcaag
atcccggcatcctacttccgccgcgaaggccgccccagcaccgaggccattctggcagcc
cgcctgattgaccgcccgctgcgccccgccttcaccaagggcatccgcaacgaggtgcag
gtcgtcgtgaccgtcctgacctacaacccggacgaaatctacaacaccttcgcgatcaac
gcggcttcggcatcgaccacgctctccggcgcgcccttcagcggccccatcggtggcgtg
cgcatggcactgattgacggccagtgggtctgcttccccaagtactcccagctggaaaac
gccgtgttcgacatggctgttgccggtcgtatcgtcaccaaggctgacggtaccgaagac
gtcgccatcatgatggtcgaggctgaggccaccgacaactcctggaagctcatcaaggaa
gacggccagaccgcccccaccgaagaggtcgtcgcccagggtctggaggccgctaagccc
ttcatcgccgccctgtgcaaggcccaggctgacctggcctcccgcgccggcaagcccgct
cttgagttgcccttcttcggcggccacggcgaggacgtggacgcagccgtgaaggaattc
gccgcagaccgcctggtcgaggtgtactccatcgctggcaagcaggaacgcgaagcagca
gcagccgagctgcaggaagagctcatggaagctctcaccggcgaaggtaaggaattcgaa
gaacgctccaacgaggtctccgtagcattcgctgccctgaccaagcacgtggttcgccag
cgcatcctcaccgagcaggtccgtatcgacggccgcggcctgaccgacatccgccagctc
accgctgaggttgaaatcctgccccgcgttcacggttccgctctcttcgagcgcggcgaa
acccagatcatgggtatcaccaccctgaacatgctcaagatggagcagcagctggactcc
ctgcacccggtcaagtccaagcgctacatccaccactacaacttcccgccgtactccacc
ggtgagaccggccgcgtgggttcgcccaagcgccgcgaaatcggccacggtgcactcgca
gagcgcgcaatcaccccggtgctgccctcccgcgaagagttcccctacgcaatccgtcag
gtctctgaggctctgggctccaacggctcgacctccatgggttcggtctgcgcatcgacc
ctgtccctgctgaacgccggtgtgccgctgcgcgcacccgttgcaggtatcgcaatgggc
ctggtctctgacgaggttgacggcgagacccgctacgcagccctgaccgacatcctcggc
gcggaagacgcactgggcgatatggacttcaaggttgcaggtacctctgagttcgtgacc
gctatccagctggacaccaagctcgacggtatccccgcatccgtgctcgctggcgcgctg
acccaggcacgtgaggctcgcctgcacatcctcgaggtgctcgtcagcgcgattgacgca
ccggatgagatgagcgagttcgcaccgcgcattatttccgtgaagatcccggttgccaag
atcggtgaggttatcggccccaagggtaagatgatcaaccagatccaggaagacaccggc
gcagacatctccattgaggacgacggcaccgtgtacatcggtgcagctgacggcccctcc
gccgaggctgcccgtgcggcagtgaacgctatcgctaacccgcaggttcccgaggtgggc
gaacgctacctgggtaccgtggtgaaggtgaccgacttcggtgcgttcatctcgctgacc
cccggtaaggacggcctgctacacatctccgagatgcgtaagctcaacggcggcaagcgc
gttgttgacgctgaggacgttgtctccgtgggccagaaggtccaggtggagatcaccaag
attgatgaccgcggcaagctctcgctggcaccggtcgttgagggtggcgacgacgagtag
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