Rothia mucilaginosa: RMDY18_15510
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Entry
RMDY18_15510 CDS
T01144
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RMDY18_15510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_15510
Enzymes [BR:
rmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RMDY18_15510
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RMDY18_15510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
SLFN-g3_helicase
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAI65383
UniProt:
D2NP15
LinkDB
All DBs
Position
complement(1739420..1743412)
Genome browser
AA seq
1330 aa
AA seq
DB search
MKATIGCKKLYLQPKKPTKEKCHKKQSRPTIEKPRTSPKSAHKMPQNKTPGHPTRHHLTP
TTRRHPPPAKPPEPRTADSGEPVSTTRKATAQPLEAPLHPLLKTLNQLSNWAAIRTAASA
QPTERSARTLIGAVAGTHAALIADISTAVRDTTAEALSLIIAPTDRQAEDLAAALRSYLP
AADIALFPAWETLPHERLSPRSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTG
IEKLEPVHLVRGEEYPFKDVVRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPPTATTPVR
LEFFGDELDEMRHFSVADQRTLSGGEELTELTLLPCRELLITPEVMSRAARLKADYPAAA
AMLEKIAGGIYVEGMESLTPLLIESMNTLTELLPAGSMIINVEPERVRARAEDLVATNEE
FLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITELVTDADLL
EDAAGALQNQNIADAIEDGIDTYTVNATPATAFNGSVERMLSQVGDLIRQQWTVLALTNG
RGSTDRLIDLFHSGEGAPAVPAARRTSLEADPAGKLEHGIVEVCEAPASAGFLVEEAKLA
VFTEAELLGRRGTYAPRGAAGQKFKTRRRRNAVDPLALNPGDYVVHERHGIGRFVEMTSR
PVAGASPVNGVQPMKEYLVIEYAPAKRGGAPDRLFVPSDQLDLISNYVGGENPSLSKMGG
SDWAKTKSRARKAVKEIAADLVKLYSARQASRGHAFAADTPWQRELEESFPYNETPDQLT
AIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYE
TFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSVVFKDLGLVI
IDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVL
TFVGPRTDSQITAAIRREIMREGQVFFVHNRVADIDDVAAEIGKLVPEARIATAHGRMSE
SRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQLHQLRGRVGRGR
ERAYAYFLYPVDKTLGEIAHERLKAVATHNELGAGLQLAMKDLEIRGAGNLLGGEQSGHI
AGVGFDLYLRLVGEAVANYRGEKEEREVETKIDLPVNAHIPHTYIDSERLRLQAYRQIAA
ADTEEKIAEAREELVDRYGELPDAVENLLAVATVRMHARAAGIHEMVVLGPKVRVVTATP
LPESRQMRLKRVYPGSTHAQPKGMDTWLTLVPRPKTMPVGGKDLVDGAMLQWAEKFINSI
YSEKPQALEE
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgacaatcgggtgcaaaaagctatatctacagccaaagaagcccacgaaagaa
aaatgccataaaaagcagagtagacctacaatagaaaagccgcgcacatcaccaaaaagt
gcgcataaaatgcctcaaaataaaacacccgggcaccccacccgacaccacctcacaccg
accacccgtcgacaccctccaccagccaaaccgccggaaccgaggacagcagattcagga
gaacccgtgagcaccacccgaaaagctaccgcacagccgctcgaagcacccctgcacccc
ctcctgaaaaccctcaaccaactcagcaactgggccgcaatccgcaccgctgcctccgca
cagcccaccgaacgtagcgcacgcaccctcatcggcgccgtcgccggaacccacgccgcg
ctcattgcagacatctccaccgcagtacgcgataccaccgccgaagcgctcagcctcatc
atcgcccccaccgaccgtcaagcagaagacctcgccgcagccctgcgctcctacctgccc
gccgcagacatcgcgctcttccccgcctgggaaaccctgccccacgaacgcctctcaccg
cgctccgacaccgtaggccgccgcctgcaggtactgcgcgccatgaccggggacgcagat
aaacgcccccaagtcgttatcgcacccgtacgcgccgtcatccagcccatcgtcaccggc
atcgaaaagctcgaacccgtgcacctggtccgcggcgaagaataccccttcaaagatgtg
gtgcgtggcctcaacgacgccgcatactcccgcgtagacctggtcgccaagcgcggcgaa
tacgccgtacgaggcggcattatcgacgtcttcccgcccaccgcaactacccccgtccgc
ctcgaattcttcggcgacgaactcgacgaaatgcgccacttctccgtcgccgaccagcgc
accctcagtgggggagaagagcttaccgaactcaccctgttgccctgccgcgaactgctc
atcacccccgaggtcatgagccgcgccgcacgactgaaagccgactacccggcagccgca
gccatgcttgagaagattgccggcggaatctacgtcgaaggcatggaatcgctcaccccg
ctgctcatcgaatccatgaacaccctcaccgagctgctgccggcagggtccatgatcatt
aacgtcgaacccgagcgcgtgcgcgcccgcgccgaagacctcgtcgccaccaacgaagaa
ttcctcgccgcagcatgggacacctctgcagaagccgacgcagtagcacccatcgacctc
ggccagctccgcatgagcgacagtggattccgcaccatcgaccaaaccaccgcacaggca
ctcgaagccaagctcagctggtgggaaatcaccgaactcgtcaccgacgcagacctactc
gaagacgccgccggggcgctccagaaccagaacattgccgacgccatcgaagacggaatc
gacacctacaccgtcaacgccacccccgcaaccgcattcaacggttccgtcgaacgcatg
ctcagccaggtcggcgacctcatccgtcaacagtggaccgtcctcgccctcaccaacggc
cgcggctccactgaccgactcatcgacctcttccactccggcgaaggggcacccgccgta
cccgcagcccgccgaaccagcctcgaagccgaccccgctggcaaactcgaacacggcatc
gtcgaggtgtgcgaggcgcccgcctccgcaggcttcctcgttgaggaggcgaagctcgcc
gtcttcaccgaagccgaactgctcggccgccgcggaacctacgcaccccgaggcgccgcc
ggacaaaaattcaagacacgccgccgccgcaacgccgtcgacccgctcgcgctgaacccc
ggcgactacgtggtgcacgaacgccacggcatcggcaggttcgtcgagatgacctcccgc
ccggtggctggtgcatccccggtcaacggcgtgcagcccatgaaggaatacctggtcatc
gagtacgcccccgccaagcgcggcggcgcgcccgaccgcctcttcgtgccctccgaccag
ctggacctcatctccaattacgtgggtggcgagaacccgagcctgtccaagatgggcggt
agtgactgggctaagaccaagtcccgcgctcgcaaagcagtcaaggaaatcgccgccgac
ctggtgaaactctactcggcacgccaggcctcgcgcggtcacgccttcgccgcagacacc
ccctggcagcgagagctggaagagtccttcccctacaacgagactcccgaccagctcacc
gccattcacgaggtaaaggaggacatggagaaagaaatccccatggaccgcctcatctcc
ggcgacgtgggcttcggcaaaaccgaggttgccgtgcgtgccgcattcaaggcggtgcag
gacggcaagcaggtcgccgtgctcgtgcccacgaccctgctcgcccagcagcactacgag
acgttcagcgagcgcttctcgggcttccccgtgaagattcgcgtgctctcccgcttccag
aaggcgaaggaaacccgccagattaccgaagagattgcatccggcgcggtggatgtggtg
attggtacgcaccgcatcctctcggacagcgtggtgttcaaggacctgggcctggtcatt
attgacgaggaacaacgctttggcgtggagcacaaggaaaagctcaagcagatgcgcacc
aacgtggacgtgctggccatgagcgcaaccccgattccgcgcaccctggaaatgtcgcta
accggtattcgtgagacctccaccttggcgactgcgccggaggagcgccaccccgtgctg
accttcgtcggcccgcgtaccgacagccagattaccgccgcgatccgccgcgagatcatg
cgtgaaggacaggttttcttcgtgcacaaccgcgtggctgacatcgacgatgttgccgcc
gaaatcggcaagctcgtgccggaggcgcgcattgccaccgctcacggtcgcatgagtgag
tcgcgcctggagcagattattgtggacttctgggagcgccgctttgacgtgctggtgtgc
acgaccatcgtggagacgggcctggatatttcgaacgcgaacacgctcatcgtggaccac
gcccagaactacggtctgagccagttgcaccagctgcgcggacgtgtgggtcgtggccgc
gagcgcgcctacgcgtacttcctgtacccggtggataagaccctcggcgagattgcgcac
gagcgtctgaaggccgtcgcgacccacaatgagctgggtgcgggtctgcagctcgcgatg
aaggacctggagattcgcggtgccggcaacctgctcggcggcgaacagtccggtcatatt
gccggggtcggttttgacctgtacctgcgcctggtcggcgaggcggtcgcaaactaccgc
ggcgagaaggaagagcgcgaggtcgagacgaagattgacctgcccgtcaacgcgcatatt
ccgcacacctacattgattctgagcgtctgcgcttgcaggcataccgtcagattgctgcc
gccgataccgaagagaagattgcggaggctcgcgaggagctggtcgaccgttacggcgag
ctgccggatgcggtagagaacctacttgccgtggcgacggtgcgtatgcacgcccgtgcc
gccggtattcacgagatggtggttctgggcccgaaggtgcgcgtggtaaccgctacgccg
ctgccggagtcccgccagatgcgtctgaagcgcgtgtaccctggctccacacacgcccag
ccgaagggtatggacacctggctgacgctggttccgcgcccgaagaccatgccggtgggc
ggtaaggacctggtggatggcgcgatgctgcagtgggctgagaagttcattaactcgatt
tactcggagaagccgcaggctctcgaggagtag
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