Roseomonas mucosa: FOB66_05385
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Entry
FOB66_05385 CDS
T06208
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rmuc
Roseomonas mucosa
Pathway
rmuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB66_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmuc03019
]
FOB66_05385
03009 Ribosome biogenesis [BR:
rmuc03009
]
FOB66_05385
Enzymes [BR:
rmuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FOB66_05385
Messenger RNA biogenesis [BR:
rmuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOB66_05385
Ribosome biogenesis [BR:
rmuc03009
]
Prokaryotic type
rRNA processing factors
FOB66_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QET92328
LinkDB
All DBs
Position
4:complement(454905..458282)
Genome browser
AA seq
1125 aa
AA seq
DB search
MTKRMLIDASHPEETRLVVMDGNRIEDFDVEAADRLPLKGNIYLAKVVRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQRLLEMQAQEAEEEEEDEAELDTAAERPAPEDDR
DLRRREAREPRGSRSGRSRSVSHAAPEEPPVDTAPPAGDAPAAPEAMASGTAAPAPGGEA
ANPGPHQVFGEAIPELPPGPSLQAPREAGEETAPLPIARSEAAPTDAAPESATHEPAQAP
DAASGTGTPGEAQEGNVQEGSVQEGNGGTPRPGRAQPMSMHVDQVSEGDPVREAGDALVL
DDTPEVPPETLGGDAEGGGEEDRSRERRIPPRFLRHYKIQEVIRRRQIMLVQVVKEERGN
KGAALTTYISLAGRFSVLMPNSPRGGGVSRKITQVADRKRLREAVEEMSLPKGMSIIVRT
AGAQRPKPEIRRDGEYLLRLWDDIRERTMGSTAPALIYEEADLIKRSLRDSYGRDIDDVE
VEGEAAWKQARDFMRMIMPQHERRVRLYRDPVVPLFVKAGVEQQLDAMMSPVVQLRSGGY
IVINQTEALVAIDVNSGRNTRDRHIEDTALRTNMEASEEIARQLRLRDLAGLIVIDFIDM
ESSKHDAQVERRLKESLRTDRARIQVGRISHFGLLEMSRQRLRPSLTEHAFMTCPHCQGR
GIVRSLESSALHVLRAIEEEGAKRRASEIMVQAAEPVAMHILNNKREWLANIEARFNMHV
LLSGEHEMSEAQFRIERLKAQTMPAPQVASRAPALRMDYLPEAVAEEPEEAEDEPEAEAA
PAGDDKAEHRPEGNADEKGENGRRRRRRRRGGRREGGERPEAEAAGEGDADQEQPVPSDE
AGPPDQPSDQSPHEAPALPAEAETAPDEEKPGGKSPEALADERGEESRGRRRGRRGGRRR
QEEGSEQTEESSEAVPPRRGERAASRYTGPTPADPFGGAYDPVMDALAAAEAAAEAAARR
LTAGELPPLAVSITAGPPPEIPAVLSGEDAATAPLPVAGEAEAPAQPPEAAPAEASAPAG
EPAGEATEEAVVVATLSEAVVEAPVAEAPVAEAMPPANEAPAAPDAAAQAVEPAGTAADA
TSAPIGTPIGTPTGAAEPVVGEPAKPVVLDGTSPSQARRAGWWRR
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgcatgctgatcgacgcctcccacccggaagagacccggctggtggtgatg
gatggcaaccggatcgaggacttcgacgtcgaggcggctgaccgcctccccctcaagggc
aacatctacctggcgaaggtggtccgcgtggagccgagcctccaggcggccttcgtcgag
tatggcggcaaccgccacggcttcctggccttcagcgaaatccaccccgactactaccag
atccccgtcgccgaccggcagcgcctgctggagatgcaggcgcaggaggccgaggaggag
gaagaggacgaggcggagctcgacaccgccgccgagcgccccgcccccgaggacgaccgt
gacctgcgccgccgcgaggcgcgtgagccccgtggctcccgctccggccgctcgcgttcc
gtcagccacgccgccccggaagagccgccggtggacaccgccccgcccgccggggacgcc
cccgccgcgccggaggccatggcatccgggaccgccgccccggcgccgggcggcgaggcc
gcgaaccccggcccgcaccaggtcttcggcgaagccatccccgagcttccccctggccct
tcccttcaggcaccgcgcgaggcgggcgaggaaaccgcgcccctccccatcgcccgcagc
gaggcggccccgacggacgccgccccggaatccgcgacccatgagccggcacaggccccg
gacgcggcctccgggaccggcacgcccggcgaggcccaggaaggcaacgtccaggaaggc
agcgtccaggaaggcaacggcggcaccccccgccccggtcgcgcccagcccatgtccatg
catgtggaccaggtctccgagggcgatccggtgcgcgaggccggcgatgccctggtcctc
gacgacacgcccgaagtcccgcccgagaccctgggcggcgatgccgagggcggtggcgag
gaggaccgcagccgcgagcgccgcatcccgccccgcttcctgcggcactacaagatccag
gaggtgatccgccgccggcagatcatgctggtgcaggtcgtgaaggaggagcgcggcaac
aagggcgcggcgctcaccacctacatctcgctggccggccgcttctcggtcctgatgccg
aactcgccgcgcggcggcggcgtctcgcgcaagatcacccaggtcgccgaccgcaagcgc
ctgcgcgaggcggtggaggagatgagcctgcccaagggcatgagcatcatcgtccgcacc
gccggcgcccagcggccgaagcccgagatccggcgcgacggcgagtacctgctccgcctc
tgggacgacatccgcgagcggaccatgggctccaccgccccggccctgatctacgaggaa
gcggacctcatcaagcggtcgctgcgcgacagctacggccgcgacatcgacgacgtggag
gtcgagggcgaggccgcctggaagcaggcccgcgacttcatgcgcatgatcatgccgcag
cacgagcggcgcgtgcgcctgtaccgcgacccggtggtgccgctcttcgtcaaggcgggg
gtggaacagcagctcgacgcgatgatgtcgccggtcgtgcagctccgctccggcggctac
atcgtcatcaaccagaccgaggcgctggtcgccatcgacgtgaactccggccgcaacacc
cgcgaccggcacatcgaggacacggcccttcgcaccaacatggaggcgtcggaggagatc
gcgcggcagctccgcctgcgcgacctcgccggcctcatcgtcatcgacttcatcgacatg
gagtcgagcaagcacgacgcccaggtcgagcgccgcctgaaggaatcgctgcgcaccgac
cgcgcccgcatccaggtcggccgcatcagccatttcggcctgctggagatgagccgccag
cggctgcgccccagcctgaccgagcacgccttcatgacctgcccgcactgccagggccgg
ggcatcgtgcgctcgctggaaagcagcgcgctgcacgtcctgcgcgcgatcgaggaggaa
ggcgccaagcgccgcgcctcggagatcatggtccaggccgccgagccggtggccatgcac
atcctgaacaacaagcgcgaatggctcgccaacatcgaggcgcgcttcaacatgcacgtc
ctgctgtcgggcgagcatgagatgtccgaggcgcagttccgcatcgagcgcctgaaggcc
cagaccatgccggcaccgcaggtggcgagccgtgcccccgccctgcgcatggactacctg
cccgaggcggtggccgaggagccggaggaggccgaggacgagccggaggccgaggccgcc
ccggccggcgacgacaaggccgagcaccgtcccgagggcaatgcggacgagaagggcgag
aacggccgccgccgccgccgccgccgccgtggcggccgccgcgagggtggcgagcgcccg
gaagcggaggctgcgggcgaaggcgacgccgaccaggagcagccggtcccgtcggacgag
gccggcccgcccgatcagccctccgaccagtccccccatgaggccccggccctccccgcc
gaggcggaaaccgctccggacgaggagaagcccggcgggaagtccccggaggccctggcg
gacgagcgcggcgaggaaagccgtggccgccgccgtggccgccgcggcggtcgccgccgc
caggaggaaggcagcgagcagacggaggaatcctccgaggccgtcccgccgcgccgtggc
gagcgtgccgccagccgctacaccgggccgaccccggccgatcccttcggcggcgcctat
gatccggtgatggatgccctggccgccgccgaggccgccgccgaggccgccgcccgccgc
ctgaccgccggcgagctgccgccgctggccgtgtcgatcaccgccgggccgccgccggag
atcccggccgtgctgagcggcgaggatgccgcgacggcgcccctgcccgtggcgggcgag
gccgaagccccagcccagccccccgaagccgcccccgccgaggcatccgcgccggccggc
gagccggccggggaggccaccgaggaagccgtggtcgtcgccaccctgtcggaagcggtc
gtggaagcccccgtcgcggaagcccccgtcgcggaagcgatgcccccggccaacgaggcc
ccggcggctccggatgccgcggcacaggctgtcgaacccgccggaacggcggcggacgcc
accagcgcccccattggcacccccattggcacccccactggcgccgccgagcccgtcgtg
ggcgagccggcgaagcccgtggtcctggacgggacctcgccgtcccaggcgcgccgcgcg
ggatggtggcggcgttga
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