Roseomonas mucosa: FOB66_13365
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Entry
FOB66_13365 CDS
T06208
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rmuc
Roseomonas mucosa
Brite
KEGG Orthology (KO) [BR:
rmuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmuc03019
]
FOB66_13365 (hrpB)
Enzymes [BR:
rmuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOB66_13365 (hrpB)
Messenger RNA biogenesis [BR:
rmuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FOB66_13365 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
CON_HrpB
Motif
Other DBs
NCBI-ProteinID:
QET93694
LinkDB
All DBs
Position
4:2160342..2162819
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AA seq
825 aa
AA seq
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MLPELPVTEALPRLAAALRDASNAVLVAPPGAGKTTLVPLSLLDEPWLGDGRILVLEPRR
LAARAAARRMSDLRGEALGQTVGLITRLDRAVSDATRIEVVTEGLLVRRLQSDPGLEGVA
AVLFDEAHERHLDTDLGLALCLDLQRALRPELRLVAMSATLDAAGFATLLGEEGRPAPVI
ESAGRMFPVEIRHRPRDLASPRDLPEAMAGAIREALREHPGDVLAFLPGWGEIARTAERL
DGLKVGGLDADVIALHGELPPAEQDRALSPSARRKVVLSTSIAETSLTVPGVRIVVDGGF
RRVPRLDPASGLSKLVTVRIGRATAEQRAGRAGRTEPGVAIRLWSEALHRGLPLADRPEI
LEAELSGLALDCAAWGAEPRDLAFPDPPPEGTLAAARALLRDLDALDAENRITPTGRRMA
RLGTHPRLARMMEAATSPEERALAADLAALLEERDPIRAPSRDRDAPSDIELRLDLLRGG
DHPGADRATLSRIRRAAGLHRRRLRVPGGMAAEGDPGALLAAGFPDRIAAKRGTMDGAFR
LASGQGARLGATDPLGKQPLLAVADLALQGTEARIRMAAPLSRAVLEERFPERFVREEGA
SFDARAGAVLPRRRLRFGPLVLEETTLPVADPTAVAEALAEAVAGRGFRDLPWTDASRRL
RARLAWAHRVEPESWPDVSDEALATRAKEWLAPHLHGLTKLTELRNLNAHEILSGLLDWP
QRRRLDAELPDRLDLPSNRSASIDYDRDPPTLEARAQHLFGLASLPPLMGGRVPLQVALL
SPAGRPVALTADLAGFWRGAWADVRKDMRGRYPKHAWPEDPTAPA
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgctccccgaacttcccgtcacggaagccctgccgcgcctggcggcagccctgcgcgac
gcttccaacgccgtcctggtcgccccgccaggcgccggcaagaccaccctggtccccctg
tccctgctggacgagccctggctgggcgatggccgcatcctggtgctggaaccccgccgc
ctcgccgcccgcgccgccgcccggcgcatgtccgacctgcggggggaggcgctgggccag
accgtgggcctcatcacccggctcgaccgcgccgtctccgacgccacccgcatcgaggtc
gtgaccgagggcctgctggtccgccgcctgcaatccgatcccgggctggaaggcgtggcc
gccgtcctgttcgacgaggcgcacgagcgccatctcgacaccgatctgggcctcgccctc
tgcctcgacctgcaacgcgccctgcggccggagctgcgcctcgtcgccatgtccgcgacg
ctggacgccgccggcttcgccaccctgctcggcgaggaaggccgccccgccccggtgatc
gagagcgcggggcggatgttcccggtggagatccgccaccgcccgcgcgacctcgcctcg
ccgcgcgacctgccggaggccatggccggcgcgatccgcgaggcgctgcgcgagcatccg
ggcgacgtgctggccttcctgcccggctggggcgagatcgcgcggaccgccgagcgcctg
gatgggctgaaggtgggcgggctcgacgccgatgtcatcgccctgcatggcgaactcccg
cccgccgagcaggaccgtgccctttccccctccgcgcggcgcaaggtggtgctctccacc
tccatcgccgaaacctcgctgaccgtgcccggcgtccgcatcgtggtggatggcggcttc
cgccgcgtgcccaggctcgaccccgcctccggcctctccaagctcgtcactgtccgcatc
ggccgcgccacggcggaacagcgcgccggccgcgccggccgcaccgagccgggcgtcgcc
atccgcctctggagcgaggcgctgcaccgcggcctgccgctggccgaccggccggagatc
ctggaggccgagctgtccggcctcgccctggactgcgccgcctggggcgccgagccgcgc
gacctcgccttccccgacccgccgcccgagggcacgctggccgccgcccgtgccctgctg
cgcgacctcgacgccctggacgcggagaaccgcatcaccccgaccggccgccgcatggcg
cgcctcggcacccacccccgcctcgcccggatgatggaggccgcgacctctcccgaggaa
cgcgccctggccgccgacctcgcggcgctgctggaggaacgcgacccgatccgcgccccc
tcccgcgaccgcgacgcgccttccgacatcgagctgcgcctcgacctgctgcgcggcggc
gaccatcccggcgccgaccgtgccaccctgtcgcgcatccgccgcgccgccgggctgcac
cgccgccgcctgcgcgtgccgggcggcatggcggcggagggcgatcccggcgccctgctc
gccgccggcttcccggaccggatcgcggcgaagcgcggcacgatggacggcgccttccgc
ctcgcctcggggcagggcgcccggctcggcgccaccgacccgctgggcaagcagccgctg
ctcgcggtggccgacctcgccctccagggcaccgaggcgcgcatccgcatggcggccccc
ctcagccgcgccgtgctggaggaacgcttccccgaacgcttcgtgcgggaggaaggcgcc
agcttcgacgcccgcgccggcgccgtcctgccccgccgccgcctgcgtttcggccccctg
gtgctggaggagaccaccctccccgtcgccgaccccacggccgtcgcggaggccctggcg
gaggccgtggcggggcgcggcttccgcgacctgccctggaccgacgcctcccgccgtctg
cgcgcccgcctcgcctgggcgcatcgggtggagccggaatcctggcccgatgtctccgac
gaggcgctcgcgacgcgggcgaaggaatggctcgccccgcacctgcacgggctgacgaag
ctgaccgagctgcgcaacctgaacgcccacgagatcctttccggcctgctcgactggcca
cagcgccggcgcctggacgcggagctccccgaccggctcgacctgccgagcaaccgctcc
gcctccatcgactacgaccgcgacccgccgacgctggaggcccgcgcccagcacctcttc
ggcctcgccagcctgccgccgctgatgggcgggcgcgtgccgttgcaggtggccctgctc
tcccccgccggacgcccggtggcgctgaccgccgacctcgccggcttctggcgcggcgcc
tgggccgatgtccgcaaggacatgcgcggccgctaccccaaacatgcctggcccgaggac
ccgaccgcccccgcatga
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