Roseomonas mucosa: FOB66_16940
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Entry
FOB66_16940 CDS
T06208
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rmuc
Roseomonas mucosa
Brite
KEGG Orthology (KO) [BR:
rmuc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmuc03016
]
FOB66_16940 (rnd)
Enzymes [BR:
rmuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FOB66_16940 (rnd)
Transfer RNA biogenesis [BR:
rmuc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FOB66_16940 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QET94305
LinkDB
All DBs
Position
4:2920329..2921513
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AA seq
394 aa
AA seq
DB search
MSRRSTPPDPAPVLVTDTDALAALCARLREEDFVTVDTEFMREKTYWPELCVVQLAGERD
VAVVDALAPGLDLAPLGELLADERVVKVFHAARQDVEIFLLRFGNTPRPMFDTQIAAMVA
GFGDQASYDSLVRALAHAQIDKAHRFSDWAARPLSAAQIAYAAADVTHLRRVYRALRDRL
QREDRLDWVGEEMAALTDPANYRTDPETVWEKLRPRTSNRRFLAALRAAAAWREREAQRV
NVPRQRLVRDESLLEIAATMPQDAAGLARARGVSEGFARGKSGAGLLAALAEARDLPDEA
LPELAREKQGPPASPALVALLKVLLAAKAEEHSVAPKLIANGEDIDRIACRDGEQVQALS
GWRRKVFGEDAMALCSGRLALGVDGKRIRLIPAR
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccgttccacgccgccggaccccgcgcccgtcctggtcaccgacaccgacgcc
ctcgccgccctctgcgcccggttgcgcgaggaggatttcgtgaccgtggacacggaattc
atgcgcgagaagacctactggccggagctgtgcgtggtgcagctggcgggtgagcgcgac
gtcgcggtggtggatgccctggccccggggctggacctcgccccgctgggcgagcttctg
gccgacgagcgggtggtcaaggtcttccacgccgcccggcaggatgtggagatcttcctg
ctccgcttcggcaatacgccgcggcccatgttcgacacccagatcgccgccatggtggcc
ggcttcggcgaccaggcttcctatgacagcctggtccgcgccctggcccatgcgcagatc
gacaaggcccaccgcttcagcgactgggcggcccgccccctgtccgcggcccagatcgcc
tatgccgccgccgacgtgacgcatctgcgccgggtctaccgcgccctgcgtgaccgcctg
cagcgcgaggaccggctggactgggtgggcgaggagatggccgccctgaccgacccggcg
aactaccgcaccgatccggagacggtctgggagaagctgcgcccccgcaccagcaaccgc
cgcttcctggcggccctgcgcgccgccgccgcttggcgggagcgcgaggcgcagcgggtg
aacgtgccgcgccagcgcctggtgcgggacgagagcctgctggagatcgccgccaccatg
ccgcaggacgccgccggcctggcccgggcgcgcggcgtgtccgagggcttcgcgcgcggc
aagtccggcgccgggctgctggccgccctggccgaggcccgcgacctgccggacgaggcc
ctgccggagctggcgcgcgagaagcagggcccgcccgcctcgccggccctggtggcgctg
ctcaaggtcctcctcgccgccaaggcggaggagcacagcgtggcgcccaagctgatcgcc
aatggcgaggatatcgaccgcatcgcctgccgcgacggggagcaggtccaggccctgtcc
ggctggcgccgcaaggtcttcggcgaggatgccatggcgctctgctccggccgcctcgcc
ctgggggtggacggcaagcggatccgcctgatcccggcccggtag
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