Ralstonia nicotianae: GO999_03060
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Entry
GO999_03060 CDS
T09041
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rnc
Ralstonia nicotianae
Brite
KEGG Orthology (KO) [BR:
rnc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rnc03016
]
GO999_03060
Enzymes [BR:
rnc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GO999_03060
Transfer RNA biogenesis [BR:
rnc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GO999_03060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QUP57601
LinkDB
All DBs
Position
665593..667674
Genome browser
AA seq
693 aa
AA seq
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MQLLFEEGGEIRAGTVLSQQGEAYQVELPSAKRAKVKSRDVLLQFAQPSAGELAQAAQAL
SSEIDLDFLWECAPAEEFGFTDLAGEYFGTDADATQQAALAIALHGSPVYFRRKGRGRYQ
RAPEDQLKAALAGLERKKQQAAQQAAYEAELKAMRLPEAFRGKALQLLFKPDKNSIEFKA
FDAACTALGMSPMRLMVAVGGIANARALHEARFLSECFPKGIGFPDVTVPEPALDLPVAD
VRAFSIDDVTTTEIDDAISVTPLDAATVRIGIHIAAPGFGIQRGEALDAIARQRLSTVYF
PGDKITMLPESVVDRYTLQEGRACPALSLYVTVDRATWAVSASETRCEIVTVAANLRHNL
LDEIVTAEALAAGTGDYPFKDELAVLWPFAGALYDARQQARIASGLKPEGAQKGDYSFYL
DPIPEAEGGGERIRIEQRKRGSPLDKIVAELMILANSTWGRMLADAGVPGIYRTQKAWGM
HRTRMQTYPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQIAAVAQHGVMAKLVAPFKPKDA
DLLAAVADFEATYAAYAAHQSTMERYWCLRWLKQEARTRTQAVVLKEGMVRFAEIPLMTR
VPELAQTARGTHVVLDVLEIDEIGLEVSCRVVEVLAPAADAEVEAAALEDELAQAEAEAP
AEPQPAADGEEIRAETGDAVAPPQQDDGTSAAS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgctgtttgaagaaggcggcgagatccgcgcaggcaccgtcttgtcccagcag
ggcgaggcctatcaggtcgaattgccgagcgccaagcgcgccaaggtcaagtcgcgtgat
gtgctgctgcagttcgcccagccgtcggccggtgaactggcgcaggccgcgcaggcgctg
tcgtcggagatcgacctggatttcctgtgggaatgcgcgcccgccgaggagttcggcttc
accgatctggccggcgagtacttcggcaccgacgccgatgccacgcagcaagcggcgctt
gcgatcgcgctgcacggctcgcctgtctatttccgccgcaagggccggggccgctaccag
cgggcgcccgaagaccagctcaaggcggcgctcgccgggctggagcgcaagaagcagcag
gccgcgcagcaggccgcctacgaagccgagctgaaggccatgcgcctgcccgaagccttc
cgcggcaaggcgctgcagctgctgttcaagcccgacaagaacagcatcgaattcaaggcg
ttcgatgccgcgtgcacggcgctcgggatgtcgccgatgcggctgatggtggcggtcggc
ggcatcgccaatgcgcgtgcgctgcacgaggcgcgtttcctgtcggagtgtttcccgaaa
ggcatcggctttcccgacgtgacggtaccggagccggcgctcgacctgccggtcgccgac
gtgcgcgccttctccatcgacgacgtgaccaccacggaaatcgacgatgcgatttcggtc
acgccgcttgatgcggccacagtgcgtatcggcatccacatcgcggcgcccggtttcggc
atccagcgcggcgaagcgctggacgcgatcgcgcgccagcggctgtccaccgtgtatttc
cccggcgacaagatcaccatgctgccggagtcggtggtggatcgctacacgctgcaggaa
gggcgcgcgtgcccggcgctgtcgctgtatgtgacggtcgatcgcgccacctgggcggtg
agcgccagcgaaacgcgctgcgagatcgtgacggtggcggccaacctgcgccacaacctg
ctggacgagatcgtcaccgccgaggcgctggctgccggcaccggcgattacccgttcaag
gacgaactcgccgtcctgtggcccttcgcgggcgcgctgtacgatgcccgccagcaggca
cgcatcgccagcggcctgaagccggaaggcgcgcagaagggcgactacagcttctacctg
gacccgatccccgaagccgagggcggcggcgagcgcatccgcatcgagcagcgcaagcgc
ggctcgccgctggacaagatcgtcgccgagctgatgattctcgccaacagcacctggggc
cgcatgctggccgatgccggcgtgccgggcatctaccgcacgcagaaggcgtggggcatg
caccgcacgcgcatgcagacctacccggcgccgcacgaggggctgggcgtggcgcaatac
gcgtggagcacctcgccgctgcgccgctacgttgatctggtcaaccagtggcagatcgcg
gcggtggcgcagcacggcgtgatggccaagctggtcgcgcccttcaagccgaaggatgcc
gacctgctcgccgccgtggccgacttcgaggccacgtatgccgcctacgctgcgcaccag
tcgaccatggagcgctactggtgcctgcgctggctcaagcaggaagcgcgcacccgcacg
caggccgtggtgctgaaggaaggcatggtgcgcttcgccgagatcccgctgatgacccgg
gtgccggaactggcgcagaccgcgcgcggcacgcacgtcgtgctcgacgtgctggagatc
gacgagatcggcctggaagtgtcgtgccgcgtggtcgaggtgcttgccccggcagcggat
gccgaggtggaggccgccgcgctggaggacgagctggcgcaagccgaagcggaagcgccg
gccgaaccccagccggccgccgatggagaagaaatccgcgccgagaccggcgatgctgtg
gcgccgccgcagcaggacgatggaacgtctgccgccagctaa
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