Ralstonia nicotianae: GO999_05815
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Entry
GO999_05815 CDS
T09041
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rnc
Ralstonia nicotianae
Pathway
rnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO999_05815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rnc03019
]
GO999_05815
Enzymes [BR:
rnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GO999_05815
Messenger RNA biogenesis [BR:
rnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO999_05815
SSDB
Ortholog
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUP58114
UniProt:
A0ABX7ZT54
LinkDB
All DBs
Position
1264838..1266325
Genome browser
AA seq
495 aa
AA seq
DB search
MNTETTSAAPSSDPVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQ
TGTGKTAGFSLPIIQNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTAL
RSAVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDM
GFLPDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVI
YTVPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKT
QTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAG
ASGDALSLFAPGDERLLADIEKLIKRNLPRETLTDFDPTGEQARERERRERDERRNRTEI
RRARERDERNGARVLDHTVVRPPFRPSEDPFFSRPYESNVPAEAAEAAKPAPAGGHPRSA
KRPIAALLGGVPRKR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgagacaacgtctgcagcaccgtccagcgatcctgtgacgttcgacacgttc
ggcctgcaccccgatatcctgcgggccctggccgagagcggctacacccgggccacgccc
atccaggccgccgcgattcccgtggtgatcgccggccgcgatgtgatgggcgcggcgcag
accggtacgggcaagaccgccggcttctcgctgccgatcatccagaacctgctgccggac
gccaacaccagcgcctcgccggcgcgccaccccgtgcgggcgctgatcctcacgcccacg
cgcgagctggctgaccaggtctacgacaacgtcgccaagtacgcgaagcacacggcgctg
cgcagcgcggtcgttttcggcggtgtcgacatgaatccgcagaccgagcagctgcgtcgc
ggcgtggaggttctcgtcgccacgccgggccgcctgctcgatcacgtgcagcagcgcagc
gtgaacctgtcgcaggtgcgcatgctggtgctggacgaagccgaccgcatgctcgacatg
ggcttcctgcccgacctgcagcgcatcatcaacctgctgccggcgcaccggcagacgctg
ctgttctcggccacgttctcgcccgagatcaagaagctggcagcgagctacctgcgccat
ccgcagaccatcgaagtggcgcgcagcaacgccaccgcagacaacgtccgccaggtcatc
tacaccgtgccggacggccacaagcaggcggcgctcgtgcacctgctgcgccagcgcgcc
gaacagggcctgccgagtcagtgcatcgtgttttccaacagcaagatcggctgttcgcgc
ctggcgagggcgctcgagcgcgagaagatcaacgccaatgccatccacggcgacaagacc
cagactgagcgcatgcagacgctcgaagcgttcaagcagggcacggtcgacgtgctggtc
gccaccgacgtggcggcgcgcggtctcgacatctcgcagatgccctgcgtgatcaacttc
gatctgccgttcaatgcggaagactatgtccatcgcatcggccgtaccggccgcgccggc
gcttcgggcgatgcgctgtcgctgttcgccccgggcgatgaaaggctgctggccgacatc
gagaagctgatcaagcgcaatctgccgcgcgagacgctcaccgatttcgatccgaccggc
gaacaggcccgcgaacgcgaacgccgcgagcgcgacgagcgccgcaaccgcaccgagatc
cgtcgggcccgcgagcgcgatgagcgcaacggcgcccgggtgcttgaccataccgtggtg
cgcccgcccttccggccgtcggaggatccgttcttctcgcgcccgtacgagtcgaacgtg
cccgccgaggctgcggaggccgccaagccggcaccggccggcggtcacccgcgcagcgcc
aagcgcccgattgccgccctgctgggcggcgtgccgcgcaagcgctga
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