Ralstonia nicotianae: GO999_13930
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Entry
GO999_13930 CDS
T09041
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rnc
Ralstonia nicotianae
Pathway
rnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO999_13930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rnc03019
]
GO999_13930
Enzymes [BR:
rnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GO999_13930
Messenger RNA biogenesis [BR:
rnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO999_13930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UTP25_NTPase-like
HI1480
Motif
Other DBs
NCBI-ProteinID:
QUP59557
LinkDB
All DBs
Position
complement(3032698..3034338)
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AA seq
546 aa
AA seq
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MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL
HRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLAGFEPDPTIAPEPIPNGRNSARAPRQGGGRSQPPRQVAGNAA
PREPRAPREPRAPREPRRESGASGQGQGQGQGQGRNGGGRQRQAQGQRDGQAAPKPRGGQ
GSGNGNGQSHARGQRQGNGQGNGQGGQRRASNTQAAQPAKVAQPAPKQPFNGLFAKAAAL
LGGRKA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgtgccgttgccgaactcggc
tacgcagaacccaccccgattcaacgccaggccatccccgcgatcctcaagggcggtgac
ctgcttgccggtgcacagaccggcaccggcaagaccgccggcttcacattgccgctgctg
catcgcctgtccgctgtgcagcccaacaaggtgcagacgccccacggcatgcgctatccc
atccgtgcgctggtgctcacacccacgcgcgagctcgccgcgcaggtggaagagagcgtg
cgcgcctacggcaagtacctgccgctgaagtcgatggtgatgttcggcggcgtcggcatc
aatccgcagatcgatgcgctcaagcgcggcgtcgatatcgtcgtggccacgccgggccgt
ctgctggaccacgtcggccagcgcaccatcgatctgtcgcacatcgaactgctggtgctg
gacgaagccgaccgcatgctggacatgggcttcatccacgacatccgcaagatcctcaac
atcctgccgcccaagcgccagaacctgctgttctcggcgacgttctcggatgatattcgc
gcgctggccgaccgcctgctggatcagcccgcgctgatcgaagtcgcgcgccgcaacacc
accgccgagacggtcgaacagcgcatctacccggtcgaccgcgaacgcaagcgcgaactg
ctcgccaagctcgtgagcgacaacgactggcaccaggtgctggtcttcacgcgcaccaag
cacggcgccaaccgcctggccgagcagctcacgcgcgacggcatcccggcgctggccatc
cacggcaacaagagccagtcggcgcgcacgcgggcgctgtcggagttcaaggccgggacg
ctgcgcgtgctggtcgccaccgacatcgccgcgcgcggcatcgatatcgaccaactgccg
cacgtggtcaacttcgacctgcccaacgtgccggaagactatgtgcaccgcatcggccgc
accggccgcgcgggcgcgcagggcgaggcgatctcgctggtgtgcgtggacgagcatggc
ctgctgcgcgacatcgagcgcctgatcaagcgcgaactgccgcgcaccgtcctggcgggc
ttcgagccggacccgaccatcgcgccggagccgattccgaacggccgcaacagtgcccgt
gcgccgcgccagggtggcggtcgcagtcagccgccgcgccaggtcgcgggcaacgccgcg
ccgcgcgagcctcgtgcgccgcgtgagcctcgtgcgccgcgtgagccgcgccgcgagtcg
ggcgccagcggtcagggtcaagggcagggtcagggccaaggccgcaatggcggcggccgc
cagcgtcaggcacaaggccagcgcgatggccaagccgcgccgaagccgcgcggcggtcag
ggcagcggtaacggcaacggccaatcgcatgcgcgcggccagcgccagggcaacggccaa
ggcaacgggcagggcggccagcgccgtgcgtccaacacgcaagccgcgcagccggccaag
gtggcgcagcccgcacccaagcagccgttcaacggcctgtttgccaaggcagcggcactg
ctcggcggccgcaaggcctga
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