KEGG   Rattus norvegicus (rat): 100312983
Entry
100312983         CDS       T01003                                 
Symbol
Kdm5d
Name
(RefSeq) lysine demethylase 5D
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    100312983 (Kdm5d)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    100312983 (Kdm5d)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     100312983 (Kdm5d)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100312983 (Kdm5d)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100312983 (Kdm5d)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD PHD_4
Other DBs
NCBI-GeneID: 100312983
NCBI-ProteinID: NP_001406781
RGD: 2314436
Ensembl: ENSRNOG00000060496
Vega: OTTRNOG00000002368
UniProt: W8C8J2
LinkDB
Position
Y:551621..647742
AA seq 1550 aa
MKPESDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEI
DNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLNKIVI
EEGGYEAICKDRRWARVAQRLNYPSGKNIGSLLRSHYERIIYPYEMFQSGANHVQCNTDP
FDSEEKDKEYKPHSIPLRQSVQPLKFSCYSRRAKRLQPEPEPTEEDIEKNPELKKLQIYG
AGPKMIGLGLMAKEKTLRKKGSIQPDKEEVTCPATVIVKGEASGFGKVTSAFSDKNLNHN
FKPCTEMTTQLRNNHSNTQFMDSYVCRICSRGDEDDRFLLCVGCNDNYHIFCLLPPLSEV
PKGVWRCPKCILAECKRPLEAFGFEQATQEYTLQSFGEMADSFKADYFNMPVHMVPTEVV
EKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNSKWTLSPEEKEYAASGWNLNVMPV
LDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLA
AEHLEDVMKTLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAY
HSGFNQGYNFAEAVNFCTADWLPVGRQCIEHYRRLRRYCVFSHEELICKMAAFPEKLDLN
LAVAVHKEMFIMVQEERRLRKTLLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALAC
YDCPDGLVCLSHINDLCKCSRSRQYLRYRYTLDELPAMLQKLKIRAESFDNWANKVQAAL
EVEDGRKRSFEELRALETEAHDRQFPNNDLLQRLKKCLTEAEACISQVLELVNNSEDRLE
TPQLTLTELQILLKQMCTLPCTIHQIDEVKDVLQQVETYQIETREALTSLPYSLEILQSL
MEKGQQLRVEVPEAHQLEELLEQAQWLDQVKQALAPSGQKHSLVIMKKLLVMGTKLASSP
SVNKARAELQELLTIAERWEEKALFCLDASQKHSPATLEVIIREAENIPVYLPNIQSLKE
ALTKAQAWIADVNEIQNGDHYPCLDDLEGLVAVGRDLPVELEELKQLENQVLTAHSWKEK
ASKTFLKKNSCYTLLEVLCPCADAGSVSTKRSRWIEKEMGLYKYDTELLGLSAQDLRDPG
SVIMAFKEGEEKEKEGILHLRHINSTKPSPMSSSINASATSICICGQVRAGVEALRCDLC
HDWFHGQCVTVPHLLSSLRASHTSSQLLAWWEWDTKFLCPLCMRSRRPRLETILSLLVGL
QRLSVRLPEGEALQCLTERAIGWQGRARQALASENVTALLKQLAKSRQQLQDELRHEKPP
TSHSGLPSECLTEDSDKDILKEEEELVLNEDMLKNSEKIVPKESSCERGEELLPSLLSQL
TGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQNPNLERIHTLLELEKPE
DPKNWSEEQTPERRQRRRQKVVLSRKGEDLTQKELASKRARSSRIKPKGKQFQEPIHGDN
VLLSHHTEHTNILKGNMNSVQGKDPSPSSTFPSLPPLLHLSYFHQQKLQQ
NT seq 4653 nt   +upstreamnt  +downstreamnt
atgaagccagaatctgacgactttctaccgccgcccgagtgcccggtgtttgagccgagt
tgggcggaattccgagatccacttggctatatagctaaaatcagacctattgcggagaag
tcaggcatttgcaagatccgcccacctgcggattggcagcctccttttgctgtagaaatt
gataacttcagatttactcctcgaattcagagacttaatgaactggaggcccagactaga
gtaaaactgaactatttggatcaaattgcaaaattctgggaaattcaaggctcttcctta
aagatacctaatgtggaaaggaaaatcttggacctttacagccttaataagattgtgata
gaggaaggtggatatgaagcaatctgcaaagaccgtcggtgggcccgtgttgcccaacgc
cttaattacccatcaggaaaaaacattggttcccttctacggtctcactatgaacggatc
atttacccttatgaaatgtttcagtctggagctaatcatgtgcaatgtaacacagatcca
tttgacagtgaagaaaaagacaaggagtacaaacctcatagcatccctctgagacagtct
gttcagccattaaaattcagttgctacagtagacgagcaaaaaggctacaacctgagcca
gaacccacagaagaagacattgagaaaaacccagagctaaaaaaactacagatatatggg
gcaggccccaagatgataggcttgggcctcatggcaaaggagaagactctgagaaagaaa
ggtagcattcaaccagataaagaagaagtgacatgccctgcaactgttatagtgaagggg
gaagccagtgggtttggaaaagtgacatcagcattttctgacaagaacttaaatcacaat
ttcaaaccttgtactgagatgactacgcagctacggaacaatcacagcaatacccagttt
atggattcatatgtttgccgaatatgctctcgtggggatgaagatgatagatttctgctc
tgtgttgggtgcaacgacaattaccatatcttttgcctattgccaccgctttctgaagtc
cccaagggggtatggaggtgcccaaagtgtatcttagcggaatgtaagcgtcccctggaa
gcttttggctttgagcaagctacacaggagtatacgttgcagagttttggtgagatggct
gattccttcaaggctgactacttcaacatgcctgtacatatggtacctacagaagttgtg
gaaaaggaattctggaggctggtgagcagcattgaggaggatgtgacagttgagtatgga
gcagacattcactccaaagaatttggcagtgggtttcctgtcaacaatagcaaatggacc
ttatctcctgaagaaaaggagtatgctgccagtggttggaatctcaatgtgatgccagtt
ctggatcagtctgttctctgccacatcaatgcagacatctcaggcatgaaagtgccttgg
ttatatgtgggcatggtgttttcagcattttgttggcatattgaggatcactggagttac
tccattaactacctgcactggggtgaaccaaagacctggtatggagtaccttctctagca
gcagaacacttggaggatgttatgaagacacttacacccgagttgtttgacagccagcct
gacctcctacaccaacttgtcactttgatgaatcccaacactctcatgtcacatggagtg
ccagttgttcgtacaaaccagtgtgcaggggaatttgtcattactttccctcgtgcttac
cacagtggctttaatcaaggctataactttgctgaggcagttaacttttgcactgctgat
tggctacctgttggacgccagtgtattgaacactaccgccgactccggcgctattgtgtc
ttttcccatgaggagctcatctgcaaaatggctgcattcccagagaagttggatctaaat
ctagcagtggcagttcacaaggagatgttcattatggtacaggaggagcggcgcctacgg
aagaccttgttggagaagggcatcacggaagctgagcgagaggcctttgagctactccca
gatgatgagcgtcagtgcatcaagtgtaagaccacgtgtttcctatcagccttggcctgt
tatgactgtccagatggtcttgtctgcctttctcatatcaatgatctgtgcaaatgctca
aggagccgacagtacttacggtacaggtacacattggatgaactgcctgctatgttacaa
aagttgaagattcgggccgagtcatttgacaactgggccaacaaagtacaagcagcccta
gaggtagaggacggacggaaacggagttttgaagagctaagagcactggaaactgaggct
catgatagacaatttcctaataatgacctgcttcagcgattgaagaaatgtcttactgaa
gcagaggcttgcatttcccaagtcctagaactagtcaataattcagaggacaggttagaa
acaccacaactcaccctgactgaactacagattcttctcaaacagatgtgcactctgccg
tgtaccatacatcagattgatgaagttaaggatgttctgcagcaggtggagacatatcaa
attgagacccgtgaggctctaacttcactgccttatagtttagaaatacttcagtccctg
atggaaaagggacagcagcttcgtgtggaagttcctgaagctcatcaacttgaagagctg
ttggagcaggcacaatggctagatcaagtgaagcaggccctggctccctcaggccagaaa
cactctctggtcatcatgaagaaacttttggttatgggtaccaagttagcctccagccct
tctgtgaacaaagctcgagcagagctacaagaactgcttactattgcagagcgttgggag
gaaaaggcccttttctgcttagacgctagccaaaagcattctccagccactttggaagtt
ataatacgtgaggcagaaaacatccctgtctacttgcctaacatccagtctctcaaggaa
gctctgactaaggcacaggcttggattgctgatgtgaatgagattcaaaatggtgatcac
tacccctgtttggatgatttggaggggcttgtagctgtgggtcgggatttacctgtggag
ctagaggaactaaaacagctggagaatcaggtactgacagcacattcctggaaagagaaa
gcttctaagacttttctcaagaagaattcttgctacacactgttggaggttctctgccca
tgtgcagatgctggttctgtcagcaccaagcgcagtcggtggattgaaaaggagatgggg
ttatacaaatatgacacagaattgctggggctttctgcacaggatctcagggacccaggt
tctgtgatcatggcctttaaggaaggggaagagaaagaaaaagaaggtatcttgcacttg
cgtcacatcaactcaactaagcccagtccaatgtcctcatcaatcaatgcctctgcaacc
tccatctgtatatgtgggcaggtccgtgcaggagtagaagctctgcggtgtgatctctgt
catgactggttccatggacaatgtgtgactgtaccccacctactcagctccttaagggct
agtcatacctcatctcaactgctagcttggtgggaatgggacaccaaattcctgtgccca
ctgtgtatgcgatcaaggcgtccacgactggagaccatattgtcattgctggtaggacta
cagagactgtctgtaaggctgcctgagggtgaggccctacaatgcctcacagagagagcc
attggttggcagggccgtgccagacaggctctagcttctgagaatgtgactgctttgttg
aaacagctagcaaaatcccgccaacaactacaggatgaattgagacatgagaagccgcct
acatctcattcaggtcttccctctgagtgtctcacagaggatagtgacaaggatatcctt
aaggaagaggaggagttggtactaaatgaagacatgctgaaaaattctgagaagattgtt
ccaaaggaaagttcatgtgaaagaggtgaggaactgttgccttcgctattatcccaatta
actggtcctgtactggaactgcctgaagccacccgggccccactagaggagcttatgatg
gaaggagatttacttgaagttaccctagatgagaaccacagcatttggcagctgctgcag
gctggacagaatcctaatctagagcggattcatacacttctagagcttgagaagcctgag
gacccaaagaattggtcagaggaacaaacaccagagaggcggcagcggcgaaggcaaaag
gtcgttctgagtagaaagggtgaggatcttactcaaaaagagctagcatcaaaaagagct
aggagttcaaggattaagcctaagggaaaacagtttcaagagccaatacacggggataat
gtgctcttgtcacaccatacagaacatacaaacatcttaaaagggaacatgaacagtgta
caagggaaggatccaagcccttcatctacttttccttccttaccacctttgctacatctc
tcttattttcatcagcaaaaattacaacaatag

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