KEGG   Rattus norvegicus (rat): 100911798
Entry
100911798         CDS       T01003                                 
Symbol
Seh1l
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno04150  mTOR signaling pathway
rno05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100911798 (Seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    100911798 (Seh1l)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100911798 (Seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    100911798 (Seh1l)
   04131 Membrane trafficking [BR:rno04131]
    100911798 (Seh1l)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100911798 (Seh1l)
Membrane trafficking [BR:rno04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    100911798 (Seh1l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd WDR55 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 100911798
NCBI-ProteinID: NP_001381923
RGD: 6490353
Ensembl: ENSRNOG00000042879
LinkDB
Position
18:63612228..63639852
AA seq 360 aa
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHEISCKLCCSCISWNPSSSRAHPP
MIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAI
ATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGSSQLGNSTPSLSSNIPNLQNSLNGTSAGRKHS
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggaccacaaggacctcatccacgatgtgtctttc
gacttccacgggcgccggatggccacctgttccagcgaccagagcgtcaaggtgtgggat
aagagcgagagcggagattggcactgcacagctagttggaagacacatagtggatctgta
tggcgtgtgacatgggctcatcctgagtttggacaagttttggcttcctgttcttttgac
cgaacagcagccgtatgggaagaaatagtaggagagtcaaacgataaacttcgaggacag
agtcactgggtgaaaaggacaactctagtggacagcagaacatctgttacagatgtgaaa
tttgctcccaagcacatgggtctgatgttagcaacctgctctgcagatggcatcgtgaga
gtctacgaggccccagatgtgatgaacctcagccagtggtccctgcagcacgagatctcg
tgtaagctgtgctgcagctgcatttcttggaacccttccagctctcgtgctcaccccccc
atgatcgctgtgggaagtgatgacagcagtccaaattcaatggccaaggttcagatcttt
gagtacaatgaaaacaccaggaaatatgcaaaagctgagactcttatgacagtcacggat
cctgtccatgacattgcgtttgctccaaatttgggacgatctttccacatcctggcaata
gcaaccaaagatgtaagaattttcacattaaaacctgtgaggaaagaacttacttcttct
ggtggtccaacaaaatttgaaatccatattgtggctcagtttgataatcataattctcag
gtctggagggtgagttggaacataacaggaacagtattggcgtcttcaggagatgacggc
tgtgttaggttgtggaaagctaattacatggacaattggaagtgcactggtattttgaaa
ggtaacgggagcccagtaaatgggagttctcagctgggaaactcaactccttcactgagc
tcaaatattccaaatcttcaaaattcattaaatggaacatctgctggcagaaagcacagc
tga

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