Rattus norvegicus (rat): 100911832
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Entry
100911832 CDS
T01003
Symbol
Rtl5
Name
(RefSeq) retrotransposon Gag-like protein 5
Organism
rno
Rattus norvegicus (rat)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4939
Retrotrans_gag
Ty3_capsid
Motif
Other DBs
NCBI-GeneID:
100911832
NCBI-ProteinID:
NP_001388173
RGD:
6490575
Ensembl:
ENSRNOG00000045779
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Position
X:complement(71223914..71228713)
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AA seq
601 aa
AA seq
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MSEAAGNLNSLRLANVALREELNALRGENVQLGLQLGRALAEVNSLRGNVSSYVRWPVPI
VPVLAEENFEFLLNETDPTPEEEEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDY
TNPDGSSDPPLSPSLSQPELHSPMSKEPTVEFLLPPLERPDIEPFSGDPVYLAEFLMQLE
TFIADHEEHFPGGADRVAFLISFFTGEAREWAISVTQEGSSLHANFPRFLDEIRKEFCGP
IPSRVAKKAIRKLKQGNCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWS
TEMADLDELILECIEIERKVRVPKPASLPAVQNSCCPFTLISNEDENEGVAFYSENEGDS
EEAGGHELYLKDHRKHMKAFPEEMRDEEEDMRKEEEEMEDEEDEDEDYEDEEEDEDEEED
EDEEEEEEEEDKEEEMMKNEDSDENKYEEDDEVIVRVLDSEQEQEREEIEHEHVYVHEHI
HAHMHALAAHHHGLHGELMVMDEPVLVDTSTQTISSAIGYHAENYLGVSPPIMPSGRQRN
QNRVPLLEGLPGTNSSFYSSPPLIRHAGRLGHRQMRRRPSVLFCLSPRQGGHRATQGRIR
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggcggcgggaaatctcaatagcctccgcttggcgaatgtggccctgagagag
gagttaaatgcccttcgaggagagaatgtccaactgggcctgcagctcggaagagccttg
gccgaggttaattccttgcggggcaatgtctcaagctatgtccgctggccagtgcccata
gtgccggtccttgccgaggagaactttgagtttctgctcaatgagaccgatcccactccc
gaggaggaggaggaggaggaagaggaggaggaggaggtgcctttcctgtgctggcctcct
ccacgcacagatcccgagtacgtctcagatgatcttttgattaatgtggtccaggactat
accaaccctgacgggtccagtgaccctcctctgtcacccagcttgtcccagccagagctg
cactcccccatgtcaaaggagccaaccgtagagttccttctgccacctctggagaggcca
gacatagaacccttttcaggcgacccagtctacctggctgaatttctgatgcagctagag
actttcatagcagatcacgaggaacacttccctgggggagcagatcgggtggcctttctg
atctcctttttcacaggggaagcgagagaatgggctatctcagtcacccaggaaggcagc
tccttgcatgccaacttcccgcgcttcctggatgaaatccgtaaggaattctgcggtccc
atcccctcacgcgtggctaaaaaggccatacgcaagctcaagcagggaaactgtaccctg
ggcagctatgcagatgcttttcagtttttggcccagttcttgtcttgggatgattgtcgc
ctccaaaaccaatttctcaaaggcttgtcagagtttttccgaaaggaactcctatggtca
actgaaatggcagacctggatgagctgattctggagtgtattgagattgaaaggaaagtg
cgtgttcccaagccagcttcactccctgcggttcaaaatagctgctgcccttttacactg
atctctaacgaggatgagaacgaaggtgtggcgttctacagtgaaaatgagggtgacagt
gaggaggcaggcgggcacgagctttatctaaaggaccacaggaagcacatgaaggctttc
ccagaagagatgagggacgaagaggaggacatgaggaaggaggaagaagagatggaggat
gaagaagatgaggatgaggattatgaagatgaggaggaggatgaagacgaggaggaggat
gaggatgaggaagaggaggaggaggaggaagacaaggaggaggaaatgatgaagaatgag
gatagtgatgaaaataaatatgaagaagatgatgaagttatagttagggtcctggattca
gaacaggagcaagagcgggaggagatagagcatgagcatgtgtatgtgcatgagcacatc
catgcacacatgcatgcacttgctgcccaccaccatggcctacatggagagctgatggtg
atggacgaacctgtccttgttgacacttcaacccagaccattagctctgcaataggctac
catgctgaaaactacctgggtgtgtcaccgcccattatgccttctggcagacagaggaac
cagaatcgagtcccacttctggagggccttccaggcaccaattcttccttctacagctca
ccaccactgattcgccatgcaggccgcttggggcatcgccagatgcgaaggcgtccctca
gtgctcttctgcctctctcctaggcagggggggcaccgtgccactcaaggtcgcattcga
gtgtga
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