Rattus norvegicus (rat): 108348771
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Entry
108348771 CDS
T01003
Symbol
Pcdhb16
Name
(RefSeq) protocadherin beta-16 precursor
KO
K16494
protocadherin beta
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rno04515
]
108348771 (Pcdhb16)
Cell adhesion molecules [BR:
rno04515
]
Cadherins
Protocadherins
108348771 (Pcdhb16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
VWA_3_C
Motif
Other DBs
NCBI-GeneID:
108348771
NCBI-ProteinID:
NP_001391845
RGD:
11492646
Ensembl:
ENSRNOG00000039471
UniProt:
A6J373
G3V987
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All DBs
Position
18:29466270..29469679
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AA seq
799 aa
AA seq
DB search
MEAAWMRNLRQRQVLAFFVLLSVSGAGAELGPYFIEEETERGSFVANLGKDLGVELAEIS
SRRARIISQENKEHLQLNVQSGDLLINERLDREELCGPIEPCVLHFQVLMENPLEIFQAE
LRVTDINDYSPVFSEREMILRIPENSARGNTFPLNNALDSDVDINNIQTYRLSSNSHFLV
VTRNRSDGRKYPELVLEKELDREEEPELRLTLTALDGGSPPRSGTTQVLIEVVDTNDNAP
EFQQPTYQVQTPENSPTGSLVLTVSANDLDSGDYGKVLYALSQPSEDISKTFEVNPVTGE
IRLRKEVNFETIPSYEVVIKATDGGGLSGKCTLLLQVVDVNDNAPEVMLSALTNPVPENS
PDEVVAVFSVRDPDSGNNGKVIASIEEDLPFLLKSSGKNFYTLVTKGALDREEREQLNIT
ITVTDLGIPRLTTQHTITVQVADINDNAPSFTQTSYTMFVRENNSPALHIGTISATDSDS
GSNAHITYSLLPPQDPQLALDSLISINVDNGQLFALRALDYEALQGFEFHVGATDQGSPA
LSSQALVHVVVLDDNDNAPFVLYPLQNASAPFTELLPRAAEPGYLVTKVVAVDRDSGQNA
WLSFQLLKATEPGLFNVWAHNGEVRTSRLLSERDAPKHKLLLLVKDNGDPPRSASVTLHV
LVVDAFSQPYLPLPEVAHDPAQEEDALTLYLVIALASVSSLFLLSVLLFVGVRLCRRARA
ASLSAYSVPQGHFPGQLVDVRGMGTLSQSYQYDVCLMGDSSGTSEFNFLKPVLPSSLHQC
SGKEIEGNSTLQNSFGFHH
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgcatggatgcgcaatctgagacaaaggcaagtcctggctttctttgttttg
ctgagtgtgtctggggcaggggcagaactgggtccctatttcatagaggaagaaacagag
aggggctcctttgtggcaaatcttgggaaagatctgggggtggagctggcagagatatcc
agccggagggctcggatcatttcccaggaaaacaaagagcatttgcagctcaacgttcaa
tctggagatttgctcataaatgagagactggaccgagaggagctgtgtggccccattgag
ccttgtgttctgcatttccaagtgttaatggaaaaccctttagagatatttcaggctgaa
ctgagggtgacggacataaacgactattctccagtgttcagtgaaagagaaatgatactg
aggataccagaaaacagtgctcggggaaatacattccctttaaacaatgctctggactca
gacgtagatatcaacaatatccagacctataggctcagctcaaactctcatttcctggtt
gtaacccgcaaccgcagtgatggcaggaagtacccagagctggtgctggagaaagaactg
gatcgagaggaggaacctgagctgaggttaacgctgacagctttggatggtggctctcct
ccccggtctgggacgacacaggtcctcattgaagtagtggacaccaacgataatgcaccc
gagtttcagcagccaacataccaagtgcaaactcccgagaacagtccaaccggctctctg
gtactcacagtctcagccaatgacttagacagtggagactatgggaaagtcttgtacgca
ctttcgcaaccctcagaagatattagcaaaacattcgaggtaaaccctgtaaccggggaa
attcgcctacgaaaagaggtgaattttgaaactattccttcgtatgaagtggttatcaag
gccacggacgggggaggtctctcaggaaaatgcactctgttactgcaggtggtggacgtg
aatgacaatgccccagaagtgatgctatctgcgctaaccaacccagtcccagaaaattcc
cccgatgaggtagtggctgttttcagtgttagagatcctgactctgggaacaacggaaaa
gtgattgcatccatcgaggaagacctgccctttcttctaaaatcttcaggaaagaacttt
tacactttagtaaccaagggagcacttgacagggaagaaagagagcaattgaacatcacc
atcacagtcactgacctgggcatacccaggctcaccacccaacacaccataacagtgcag
gtggcagacatcaacgacaatgccccctccttcacccaaacctcctacaccatgtttgtc
cgcgagaacaacagccccgccctgcacataggcaccatcagcgccacagactcagactca
ggatccaatgcccacatcacctactcgctgctaccgccccaagacccacagctggccctc
gactccctcatctccatcaatgtagacaacgggcagctgttcgcgctcagggcgctagac
tatgaggctctgcagggcttcgagttccatgtgggcgccacagaccaaggctcgcccgcg
ctcagcagccaggctctggtgcacgtggtggtgttggacgacaatgacaatgcgcccttc
gtgctctacccgctgcaaaacgcctctgcacccttcactgagctgctgcccagggcggca
gagcctggatacctggttaccaaggtggtagctgtggaccgcgactctggccagaatgcc
tggctgtcattccagctgctcaaggccacggagcccgggctgttcaacgtatgggcgcac
aatggcgaggtacgcacctccaggctgctgagcgagcgcgacgcacccaagcacaagctg
ctgctgttggtcaaggacaatggagatcctccacgctctgccagtgttactctgcacgtg
ctagtggtggatgccttctctcagccctacctgcctctgccagaggtggcgcacgaccct
gcacaagaagaagatgcgctaacactctacctggtcatagctttggcatctgtgtcttct
ctcttcctcttgtctgtgctgctgttcgtgggggtgaggctctgcaggagggccagggca
gcctctctgagtgcctattctgtgcctcaaggccactttcctggccagctggtggatgtc
agaggtatggggaccctgtcccagagctaccagtatgatgtatgtctgatgggggattct
tctgggaccagcgaatttaacttcttaaagccagttctgcctagctctctgcaccagtgc
tctgggaaagaaatagagggaaattccacactccagaatagttttgggtttcatcattaa
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