Rattus norvegicus (rat): 116643
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Entry
116643 CDS
T01003
Symbol
Vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04137
Mitophagy - animal
rno04141
Protein processing in endoplasmic reticulum
rno05014
Amyotrophic lateral sclerosis
rno05022
Pathways of neurodegeneration - multiple diseases
rno05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116643 (Vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116643 (Vcp)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
116643 (Vcp)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116643 (Vcp)
05022 Pathways of neurodegeneration - multiple diseases
116643 (Vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
116643 (Vcp)
03009 Ribosome biogenesis [BR:
rno03009
]
116643 (Vcp)
04131 Membrane trafficking [BR:
rno04131
]
116643 (Vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
116643 (Vcp)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
116643 (Vcp)
Ribosome biogenesis [BR:
rno03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
116643 (Vcp)
Membrane trafficking [BR:
rno04131
]
SNARE
SNARE associated proteins
Others
116643 (Vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116643 (Vcp)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
116643 (Vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
RNA_helicase
AAA_28
Vps4_C
nSTAND3
AAA_18
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_7
ATPase
DUF815
Bac_DnaA
ABC_tran
AAA_24
NB-ARC
ResIII
TsaE
Zeta_toxin
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
bpMoxR
KAP_NTPase
Zot
UFD1
DUF3944
Motif
Other DBs
NCBI-GeneID:
116643
NCBI-ProteinID:
NP_446316
RGD:
621595
Ensembl:
ENSRNOG00000034242
UniProt:
P46462
A6IIZ6
LinkDB
All DBs
Position
5:complement(62005984..62025387)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGNVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctctggagccgattcaaaaggtgatgatttatcaacagccattctcaaacagaag
aaccgtcccaatcggttaattgttgatgaagccatcaatgaagataacagtgtggtgtcc
ttgtcccagcccaagatggatgaactacagttgttcagaggtgacacggtgttgctaaaa
ggaaagaagagaagggaagctgtatgcattgttctttctgatgacacgtgttctgatgag
aagattcgaatgaatagagttgttcggaataacctccgagttcgcctaggagatgtcatc
agcatccagccatgccctgatgtaaagtatggcaaacgtatccatgtgctacccattgat
gacacagtggaaggcatcactggcaatctttttgaggtataccttaagccgtacttcctg
gaagcatatcggcccatccgtaaaggagatattttccttgtccggggtgggatgcgtgct
gtggagttcaaagtagtagagacagatcccagcccttactgtattgttgctccagacaca
gtgatccactgtgagggggagccaatcaagcgagaggatgaggaggagtccttgaatgaa
gtaggctatgatgacatcggtggttgcaggaagcagctagctcagataaaggagatggtg
gagctgccactgagacatcctgcactctttaaggcaattggtgtgaagcctcctcgggga
atcttgctatatggacctcctgggacagggaaaaccttgattgcccgagctgtggcaaat
gaaactggagccttcttctttctgatcaatggtcctgaaatcatgagcaaattggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaagctgaaaagaatgctcctgccatc
atcttcatcgacgagcttgatgccattgcacccaaaagagagaaaactcacggggaagtg
gagcgtcgcatcgtgtctcagttgttgacccttatggatggcctaaagcagagagcacat
gtgatagttatggcagcaaccaatagacccaacagcattgacccagccctacggcgattt
ggtcgctttgacagagaggtagatattggaatccctgatgctacaggacgtttggaaatt
cttcagatccataccaagaacatgaaactggcagatgatgtggacttggaacaggtagcc
aatgagactcatggtcatgtgggtgctgacttggcagccctgtgttcagaggctgctcta
caggccatccggaaaaaaatggacctcattgacctagaagatgagaccattgacgctgag
gtcatgaattccctggcagttactatggatgacttccggtgggccttaagtcaaagcaac
ccatcagcacttcgggaaactgtggtagaagtgccacaagtaacctgggaagacattgga
ggcctggaggatgtcaaacgggagcttcaggagttggttcagtatcctgtggagcatcca
gacaaattcctcaaatttggcatgactccttccaaaggtgttcttttctatggaccgcct
ggctgtgggaaaaccttactggccaaagccattgctaatgaatgccaggctaacttcatc
tccatcaagggtcctgagctgcttaccatgtggtttggggaatctgaggccaatgtcagg
gaaatatttgacaaggcacgacaagctgccccctgtgtactcttctttgatgagttagat
tcaattgccaaggctcgtggtggtaatattggagatggtggtggagctgcagaccgagtc
atcaatcagatcctgacagaaatggatggcatgtccacaaaaaagaatgtgtttatcatt
ggagctaccaaccggcctgacatcattgatcctgctatcctaagacctggccgtcttgat
cagctcatttatatcccacttcctgatgagaagtcccgtgttgccatcctaaaagccaat
ctgcgaaaatccccagttgccaaggatgtggatttggagttcttggctaagatgactaat
ggcttttctggagctgacctgacagaaatttgccaacgtgcttgtaaactagccattcgt
gaatctatcgagagtgagattaggcgagaacgagagaggcagacaaatccatcagctatg
gaagtagaagaggatgatccagtgcctgagatccgcagagatcactttgaggaagccatg
cgttttgcccgacgttctgtcagtgataatgacattcggaagtatgaaatgtttgcccag
acactgcagcaaagtcgaggttttggcagcttcagattcccttcagggaaccagggtgga
gctggcccaagtcagggcagtggaggtggcacaggtggcaatgtgtacacagaagacaat
gacgatgacctctatggctaa
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