Rattus norvegicus (rat): 134478941
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Entry
134478941 CDS
T01003
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03410
Base excision repair
rno04140
Autophagy - animal
rno04217
Necroptosis
rno04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
134478941
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134478941
09143 Cell growth and death
04217 Necroptosis
134478941
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
134478941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
134478941
03400 DNA repair and recombination proteins [BR:
rno03400
]
134478941
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
134478941
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
134478941
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
134478941
MMR (mismatch excision repair)
Other MMR factors
134478941
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
134478941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
134478941
NCBI-ProteinID:
XP_063117346
LinkDB
All DBs
Position
5:37705069..37706161
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEDDEEDEEDEEEEEEEEDEDEEEDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagctgagaggcaaaatgtcctcatatgcattctttgtg
caaacctgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag
ttctccaagaagtgctcagagaggtggaagaccatgtctgctaaagaaaaggggaaattt
gaagatatggcaaaggctgacaaggctcgttatgaaagagaaatgaaaacctacatcccc
cccaaaggggagaccaaaaagaagttcaaggaccccaatgctcccaagaggcctccttcg
gccttcttcttgttctgttctgagtaccacccaaaaatcaaaggcgagcatcctggttta
tccattggtgatgttgcgaagaaactaggagagatgtggaacaacactgccgcggatgac
aagcagccctgtgagaagaaggccgccaagctgaaggagaagtatgagaaggatattgct
gcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggtcaaggctgagaag
agcaagaaaaagaaggaagaggaagacgacgaggaggatgaagaggatgaggaagaggag
gaagaagaggaagacgaagatgaagaagaagatgatgatgatgaataa
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