Rattus norvegicus (rat): 171379
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Entry
171379 CDS
T01003
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03082
ATP-dependent chromatin remodeling
rno04714
Thermogenesis
rno05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
171379 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
171379 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
171379 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
171379 (Smarca4)
03036 Chromosome and associated proteins [BR:
rno03036
]
171379 (Smarca4)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
171379 (Smarca4)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
171379 (Smarca4)
Chromatin remodeling factors
BAF complex
171379 (Smarca4)
PBAF complex
171379 (Smarca4)
GBAF(ncBAF) complex
171379 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Htt_C-HEAT
DUF2009
Motif
Other DBs
NCBI-GeneID:
171379
NCBI-ProteinID:
NP_599195
RGD:
621728
Ensembl:
ENSRNOG00000009271
LinkDB
All DBs
Position
8:28438370..28535071
Genome browser
AA seq
1613 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEE
DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAE
VERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKR
KRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYK
DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ
NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVK
VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEEQEEDRSGSGSEED
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccagacccacccctgggtggaacccctcggcctggtccttccccaggccct
ggtccttcacctggtgcaatgctgggtcctagccctggcccctcaccaggttctgcccac
agcatgatggggccaagcccaggacctccttcagcaggacatcccatgcccacccagggg
cctggagggtacccccaggacaacatgcatcaaatgcacaagcctatggagtccatgcac
gagaagggcatgcctgatgacccacgatacaaccaaatgaaagggatgggcatgcgatca
ggggcccacacaggtatgggacctccgcctagtcccatggaccagcattctcaaggttac
ccctcacccttaggtggctctgaacatgcctccagtcctgtcccggccagcggcccatct
tcaggccctcagatgtcctctgggccaggaggggccccactagatggttctgacccccag
gccttggggcagcaaaacagaggcccaaccccatttaaccagaaccagctgcatcaactc
agagctcagataatggcctataagatgttggccaggggccagccattgcccgaccacctg
cagatggccgttcaaggcaagcggccgatgcctggaatgcagcagcagatgccaacacta
cctccaccttcagtgtctgccacaggacctggacccggccctggccctggccctggccca
ggtccaggaccagcccctccgaattacagtagaccccatggtatgggagggcccaacatg
cctcctccaggaccctcaggtgtgccccccgggatgcctggtcagcctcctggagggcct
cccaagccatggcctgaaggacccatggccaatgctgctgcccccacaagcaccccacag
aagctgattcccccgcaaccaacaggccgcccttcacctgcacctcctgctgtcccgcct
gctgcctcacctgtaatgccaccacaaacacagtccccagggcagccagcccagcctgct
ccattggtgccattgcaccagaagcagagccgcatcacccccatccagaagccccggggc
ctggaccctgtggagatcctacaggagcgggagtacaggctgcaggctcgaatcgcacac
agaattcaggaacttgaaaacctccctgggtccctggctggggaccttcgaaccaaagca
accatcgaactcaaggcccttaggttgctgaacttccagaggcagctgcgccaggaggtg
gtggtgtgcatgcgaagagacacagccctagagacagccctcaatgccaaggcttataag
cgcagcaaacggcagtcactgcgggaggcccgcatcactgagaagctggagaagcagcag
aagattgaacaggaacgcaagcgtcgtcagaagcaccaggagtacctcaacagcattctg
cagcatgccaaggacttcagggagtatcacagatcagtcacaggcaaactccagaaactc
accaaggctgtggccacctaccatgccaacactgagcgggagcaaaagaaagaaaatgag
cgcatcgagaaggaacggatgcgaaggcttatggctgaagacgaggagggctaccgcaag
ctcattgaccagaagaaggacaagcgcctggcctacctcctgcagcagacagatgagtat
gtggccaacctcacagagctggtgcggcagcacaaagctgcccaggtagccaaggagaag
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaagggcagacacctgccattgga
cccgacggtgagcctctggatgagaccagccagatgagtgacctccctgtgaaggtgatc
catgtggagagtggcaagatcctcactggcacagatgccccaaaagccgggcagctggaa
gcctggcttgagatgaacccagggtatgaagtagctcccagatcagatagtgaagaaagt
ggctctgaagaggaggaggaggaggaggaagaggagcagcctcagcccgcacagccccct
acactgcctgtggaagaaaagaagaagattccagacccagacagcgatgatgtctctgag
gtggacgctcgacacattattgagaacgccaagcaggatgtggacgatgagtacggcgtg
tcccaggcccttgctcgtggtctgcagtcctactatgctgtggcccatgcagtgacagag
agagtagataagcagtcagccctcatggtcaacggtgtcctcaaacagtaccagatcaag
ggtctggagtggctggtgtccctgtacaacaacaacctgaacggcatcctggctgatgag
atggggctggggaagaccatccaaaccattgcactcatcacgtacctcatggagcacaag
cgcatcaatgggcccttcctcatcatcgttcctctctcgacgctgtcaaactgggcatat
gaatttgacaagtgggccccctctgtggtgaaggtttcctacaagggctctccagctgcc
agacgagcttttgtcccccagcttcgcagcggcaagttcaatgtcttattgaccacctac
gagtatatcatcaaagacaaacatatcctggccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaagaaccaccactgcaaattgacacaggtccttaatacacac
tacgtggcccctcggcgcctgcttctcacaggcacgccactgcagaacaagctacctgag
ctctgggcactgctgaacttcctgctccccactatcttcaagagctgcagcaccttcgaa
cagtggttcaatgcaccctttgccatgactggagagaaggtggacctgaatgaggaggag
accatcctcattattcgtcgtctacacaaggtgctacggcccttcctgctgcggcgtctc
aagaaggaagttgaagcccagctccctgagaaggtagaatatgtcatcaaatgtgacatg
tcagccctgcagcgtgtgctctaccgtcacatgcaggccaaaggtgtgctgttgactgac
ggctctgagaaggacaagaagggcaaaggtggcaccaagacgctgatgaacactatcatg
cagctgcgcaagatctgcaaccacccctacatgttccagcacattgaggagtccttctct
gagcacctggggttcaccggtggcatcgtgcaaggattggacctatatcgtgcctcaggg
aaatttgaacttcttgatagaattctacccaaactccgtgcaacaaaccataaagtgcta
ctcttctgccaaatgacctccctcatgaccatcatggaagactactttgcataccgtggc
ttcaaatacctcaggcttgacggaaccacaaaagcagaagaccggggcatgctgttgaaa
acctttaatgagcctggctctgagtatttcattttcctactcagtacccgtgctgggggg
ctgggcctgaatctgcagtcagctgacactgtgatcatctttgacagtgactggaatcct
caccaggacctgcaagcacaggatcgtgcccatcggattgggcagcagaatgaggtgcgt
gtgcttcgcctgtgcaccgtcaacagtgtggaagagaagatactggctgctgctaaatac
aaactcaatgtggatcagaaggtcatccaggcaggcatgtttgaccagaagtcttccagc
catgagaggcgtgccttcctgcaggccatcctggagcacgaggagcaggacgaggaggaa
gatgaggtgcctgatgatgagaccgtcaaccagatgattgcccggcacgaagaagaattt
gacctcttcatgcgcatggacttggaccgccggcgtgaagaagcccgcaaccccaagcgg
aagccacgcctgatggaagaggatgagcttccatcctggatcatcaaggatgatgcagag
gtagagcggctgacatgtgaagaggaagaggaaaagatgttcggccgtggttctcgccac
cgcaaggaggtagactacagcgactcactgacagagaagcagtggctcaaggctatcgag
gagggcacgctggaggagatcgaagaggaggtccggcagaagaaatcttcacgtaagcgt
aagcgagacagcgaggccggctcctccaccccgaccaccagcacccgcagccgtgacaag
gacgaggagagcaaaaagcagaagaaacgtgggcggccacctgccgagaagctgtcccca
aacccacctaacctcaccaagaagatgaagaagatcgtggacgctgtgatcaagtacaaa
gacagtagtggacgtcagctcagtgaggtgttcattcagctcccctctcgcaaggaactt
cctgagtactatgagctcatccggaaacctgtggacttcaagaagatcaaggaacgcatc
cgaaaccacaagtaccgcagcctcaatgacctggagaaggacgtgatgttgctgtgccag
aatgctcagaccttcaacctcgagggctccctgatctacgaggactccatcgtcctgcag
tctgtcttcaccagcgtgcggcagaaaatcgagaaggaggatgacagtgaaggcgaggaa
agcgaggaggaagaagagggcgaggaggaaggctctgagtctgagtcccgctctgtcaag
gtaaagatcaagctgggtcgaaaggagaaggcccaggaccgactcaaggggggcaggcgg
cggccaagccgggggtcccgggccaagcctgtcgtgagtgacgatgacagtgatgaggag
caggaggaggaccgctcaggaagtggcagcgaggaagactga
DBGET
integrated database retrieval system