Rattus norvegicus (rat): 245926
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Entry
245926 CDS
T01003
Symbol
Scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
245926 (Scaf8)
03041 Spliceosome [BR:
rno03041
]
245926 (Scaf8)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
245926 (Scaf8)
Spliceosome [BR:
rno03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
245926 (Scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
245926
NCBI-ProteinID:
NP_620794
RGD:
708362
Ensembl:
ENSRNOG00000016919
UniProt:
Q63623
F1LPT8
LinkDB
All DBs
Position
1:46132972..46321162
Genome browser
AA seq
1268 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTVAMSNTPGTPVTPVTPANVVQGLPDPWVS
QITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQL
TAAAAAANTLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEIPTPQLSHVSESVNNSIF
HQIAEQLQQQNLEQLRQQLLEQQQPQKVTPQDSQEGAFGSEHSASPSQGSSQQHFLEPEA
NLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIG
SKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWE
TVKTSEPVKETVQTTQSPAAVEKETVVTTQSEVFPPPVTMLQIPVAPTVPAVSLVPPAFP
VSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPL
SMTPETVKDVGFGSLVLPGGSVAGNLAPSTLPAGNVFNPPSKAEPEEKVPHLTEHQIPSG
ENTRPVIPSDIPSSAPMLAQPPGASNTSGILCVQRPNVSSNSEILGVRPANVSNSAAIMG
AQPPNMLNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLLGTQPP
IGPQNLPPLTIPAQRMPALPMLDIRPGLIAQAPGPRFPLLQPGIPPQRGIPPPSVLDAAL
HPPPRGPFPPGDLFSQPERPFLAPGRPNIDSVPNPDKRIPLGNDNIQQEGDRDYRFPPIE
TREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDMRETLVRPGLDHLGRR
DHFGFPPEKPWGPRDFDEREHRVLPVFGGPKGLHEERGRFRAGNYRFDPRSGPWNRGFGQ
EVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGAT
SQRKGENVPQVNGGNTERHAPPPPLPVQKDPELYEKLASSGDADKEESGTAAGVESEAVV
ESTETEGT
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaacagcgagttgtattcgctgaatgactataagccaccc
atttctaaagcaaaaatgacccagattacaaaggcagccatcaaagctattaagttctat
aaacatgtggtacagagcgttgagaaattcattcagaaatgtaaaccagaatacaaggta
cccggactgtatgttattgactccattgtgcgacaatcccggcatcaggttggtcaagaa
aaggatgtgtgtgcacccagatttagtaataacatcattagcactttccagaatttatat
cggtgcccgggggatgacaagagtaaaatagtgagagtattaaacttatggcagaagaat
aatgtttttaagagcgagattatccagcctctcctggatatggcggcagggattcctccc
ccagttgtcaccccggttttggccagcaccactgtagccatgagcaacactccaggaaca
cctgtgacacctgttactccagccaatgtggttcaaggcctacctgatccatgggtatcg
cagataacaaacacagacacactggcagctgttgcccagatcctacaaagtcctcaaggt
caacagcttcagcaactaatacagaccttacagatacaacagcagaagccccagccctct
atccttcaggctttggatgctggccttgtggttcagttgcaggcactcactgcacagctt
acagctgcagctgctgcagccaacacacttactcccttggaccagggagtctctttcaac
aagaagttgatggatagatttgattttggggaagattctgagcatagtgaagaatccaaa
aaggaaattcctactcctcaactctctcacgtttctgagtctgtgaacaactccatcttc
catcagatagcagaacagctgcagcagcagaacctggagcagttgcggcagcagctcctg
gagcagcagcagcctcagaaggtaactcctcaggacagccaggagggagcatttggctct
gagcactcagcttcaccctcacaagggagtagccaacagcattttctggaacctgaagca
aatttagatgattccatagacattcagcaacaggatatggatattgatgaagggcaagat
gttgttgaagaggagatctttgaaccagaagctaagaaagtagctgttcgctcaagatca
agaactcattcacgatctcgatcaaggtcaccaagaaaacggaggtccaggtcacgctct
gggtcccgaaagcgaaagcataggaagaggtctcgctcccgctccagagagagaaagaga
aaatcctcacgttcctattcaagtgaacgcagagccagggaaagggagaaagaacgccaa
aaaaagggcttgcctcctgtcagatcgaaaacgctaagtgtatgcagcactactctctgg
gttggccaagtggacaagaaggctacacagcaagatttaaccaacctttttgaggagttt
gggcaaatcgaatccattaatatgattccacccaggggctgtgcatatgtctgtatggtt
catcgacaagattcatttcgggctctccagaaactgagttcaggatcctataaaattggt
tccaaggtcattaagattgcctgggctttgaacaaaggtgtaaagacagaatacaaacag
ttctgggacgtggatcttggagtcacatatataccctgggaaaaagttaaagtagatgac
ttggatggctttgcagagggaggcatgattgatcaggaaactgtaaatgctgaatgggaa
actgtgaaaacctcagaacccgttaaagagactgtccagacgacacagagtccagctgca
gttgagaaggagacagtggtcacaacgcagtcagaggttttccctcctcctgtcaccatg
ctgcagattcctgtagcaccaaccgttcctgcagttagcttagttccaccagcgtttcct
gtgtcgatgcctgtcccccctcctggattcagccccatccctccacctccttttctacga
gcaagttttaacccttcacaaccacctcctggttttatgccacctccagttcccccacct
gtggtacctccccctgcaatcccacccgtagtaccaacatctttagtgcaaccaccattg
tctatgaccccagaaactgtgaaagatgttggatttggcagccttgttttaccaggtggt
tctgttgctggcaatcttgctccttcaactctaccagctggaaatgtttttaatcctccc
agtaaagcagagcctgaagaaaaagtacctcaccttacagaacaccagattccttctggt
gagaataccagaccagtgattccaagtgatattccaagcagtgctccaatgttagcacag
ccgcctggggcctcaaacacctctgggatcctgtgcgtgcagagaccaaacgtatcaagc
aattctgaaattctgggggttcgtccagccaatgtttccaacagtgctgcgattatggga
gcccagccaccaaatatgctcaataactctggaattttgggcatacagccaccaaatgtg
tccagtggctctggacttcttggggtactgcctccaaacttgcctaacaactctggactt
gtaggactacagccaccaaatgttacaaatcctgctggacttttgggaacacagccacca
attggacctcaaaacttaccccctttaaccatccctgctcaaaggatgcctgcgttgcca
atgttagacattcgtccgggactgatagcacaggctcctgggccaagattccctttacta
cagcctggaattccaccacaacggggtatccctcccccatcggtacttgacgcagctctt
catccaccaccccgtggaccttttcctccaggggatctttttagtcagccagaaagacct
tttctggctcctggaagaccaaatatagacagtgttcctaacccagataaaagaatacca
cttgggaatgacaatatccagcaggaaggggatagagattaccgctttcctcctatagaa
accagggagggcattaatagacctcctccagtggatgttagggatgtggttggacgacct
atagatcccagagaaggccctggtaggcctccgttagatggtagggatcattttggaaga
cctccagtggacatgagagagactcttgtgaggccaggtctagaccaccttggccgaaga
gaccactttggctttcccccagaaaagccttgggggcctagagatttcgatgagagagag
caccgagttctgcctgtctttggtggtccaaagggcttacatgaagaaagaggcagattt
cgggctggaaattatcgatttgatcctagaagtggtccttggaacagaggatttggacaa
gaagttcacagagattttgatgaccgcagaagaccctgggagaggcagagggatagggat
gacagagattttgatttctgcagagaaattaatgggaatcgtcttggacgagatagaatt
caaaacacttgggttccccctcctcatgctcgggtttttgattatttcgaaggggccact
tctcaacggaaaggtgagaatgtgcctcaagttaatggtggaaatacagagagacatgct
ccgccaccgcctttgccagtgcagaaggaccctgaactctatgagaagctggcgtcttca
ggagacgcagacaaggaggagagcggcacagctgctggtgtagagagtgaagcggtggta
gaaagcacagagactgaggggacataa
DBGET
integrated database retrieval system
