Rattus norvegicus (rat): 245957
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Entry
245957 CDS
T01003
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform 1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
245957 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
245957 (Ddx46)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
245957 (Ddx46)
Spliceosome [BR:
rno03041
]
Complex A
U2 snRNP components
U2 related factors
245957 (Ddx46)
Complex B
245957 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
245957
NCBI-ProteinID:
NP_620798
RGD:
708480
Ensembl:
ENSRNOG00000021637
UniProt:
Q62780
LinkDB
All DBs
Position
17:complement(8947237..8993705)
Genome browser
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKSKKAENRSRS
KEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEDEELDPLDAYMEEVKEEVK
KFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSAPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGPLLAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggcagggagtctcgccattaccgaaaacggtcagcatctcgaggtcgctctggaagt
cggtctaggagtcgctcaccctctgacaaaagaagcaaacgtggagatgacaggcgttcc
aggagtagagacagagacagaaggagagagaggtctcggagcagggacaaaaggagatct
cggtcacgggacaggaaacgcctgagacgttccagaagtagagagcgtgacagaagccga
gagcgaagaagatctcgaagccgggatagaaggcgctcaaggagtcggagccggggcagg
cggtcccggtcttccagtcctggcagcaaaagcaagaaagctgagaacaggtctaggtcc
aaagagaaagcagaaggtggggacagctccaaggagaagaagaaagacaaggacgacaag
gaggacgagaaagagaaggatgctgggaattttgaccagaataagctggaagaagaaatg
agaaaacgaaaagaaagggttgaaaaatggcgagaagagcagcgtaaaaaggcgatggag
aacataggggagctgaagaaggagatcgaggagatgaagcaggggaagaagtggagcctg
gaagatgacgacgatgatgaagatgaccctgccgaggctgagaaggaagggaatgaaatg
gaggacgaggagctggacccattagatgcctacatggaggaagtgaaagaagaggtaaaa
aagtttaacatgaggagcgtgaaaggcggcgcaggaaatgagaagaagtccggaccgact
gtcacgaaagtggttactgtggtaacaaccaagaaagcagtagtagatgccgacaagaag
aagggagagctgatggagaatgaccaggacgccatggagtactcctcggaggaggaagag
gttgaccttcagacggccctcacaggctaccagacaaaacagagaaagcttctagagcca
gtggatcatgggaaaattgagtatgagccattcagaaaaaacttttacgttgaagttcca
gaattagcgaaaatgtctcaagaagaggtgaatgtgtttcggttggaaatggagggcatt
acagttaaaggaaaaggttgccccaagccaattaaatcatgggtccagtgtggaatttcc
atgaagatactgaattccctcaaaaagcatggctatgaaaagcccacaccaatccaaact
caagcaattcctgctataatgtctggacgagatttgattggcattgccaagacaggaagt
ggaaaaaccattgcttttcttttgcccatgtttagacacatcatggatcagaggtcattg
gaagaaggagagggaccaatcgctgtcatcatgactccaactcgagaactggctttacaa
atcactaaagaatgtaagaagttttcgaagaccttgggactgagagtggtctgtgtgtat
ggagggacaggaatcagcgagcagattgctgagctgaagagaggcgctgagatcattgtt
tgcacacctggccggatgatcgacatgctggcagctaacagtggtcgggtcacaaatctt
cgaagagtgacatatgttgttttagatgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggacaatgtccgtcctgaccgacagacagttatgttctca
gctactttcccaagagctatggaagcgttggcccgcaggatcttgagcaagcccattgaa
gttcaggttggaggccggagtgtggtttgctcagatgtggaacaacaagtgattgtgatt
gaagaagagaagaaattcttgaaattgctggagcttttaggccattatcaggagtcagga
tctgtcattatatttgtggataagcaggaacacgctgatggtcttctgaaggacttgatg
agagcttcctacccttgcatgtctcttcacggaggtattgatcagtatgacagggacagt
atcataaatgactttaagaatggaacctgcaaacttctcgtagccacgtctgttgccgcc
cgtggtctagatgtgaaacatctcattcttgtagtaaattacagctgccccaatcattac
gaagattacgtgcacagggctgggcggactggaagagcaggcaacaagggttatgcctac
accttcatcacagaagaccaagctcgatatgctggggacatcattaaagctcttgaactg
tcggggacggcggtgcctcctgacctagagaaactatggagtgacttcaaagatcagcag
aaagctgaaggaaaaataattaaaaagagcagcggcttctctggcaaggggttcaagttt
gatgagacagagcaggctttagccaatgagaggaaaaagctacaaaaagctgcccttggc
ctgcaggattctgatgacgaggacgccgcagttgatattgacgagcagattgaaagcatg
tttaattccaagaagagagtgaaagacatggctgctcccggcacatccagtgcgcctgct
ccgactgcgggcaatgctgagaagctagagattgccaagaggttggcgcttagaatcaac
gctcagaagaacctgggcatcgagtctcaggtagatgtgatgcagcaggccacaaatgcc
atcctcagaggtggccctcttctggctcccaccgtgtctgcaaaaaccatcgcagagcag
cttgccgagaagatcaatgccaagctcaattacgtgcctttggagaaacaggaagaagag
agacaggagggtgggcagagcgaatctttcaagagatacgaggaagaattagaaattaat
gacttcccacagacggcgaggtggaaagttacctctaaggaagccttgcagaggatcagt
gagtactcggaagccgccatcacaatcagagggacctacttcccgcctggcaaagagccc
aaggaaggagagcggaagatctacttggcgattgaaagtgccaacgagctggctgtgcag
aaagcaaaggcagagatcaccaggctcataaaagaggagctgatccgactgcaaaattca
taccaacccaccaacaaaggacgatacaaagtattataa
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