Rattus norvegicus (rat): 245976
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Entry
245976 CDS
T01003
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
245976 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
245976 (Xab2)
03041 Spliceosome [BR:
rno03041
]
245976 (Xab2)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
245976 (Xab2)
Spliceosome [BR:
rno03041
]
Complex B
Other components
Prp19-related factors
245976 (Xab2)
Complex C
245976 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_MalT
TPR_1
TPR_21
TPR_16
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
245976
NCBI-ProteinID:
NP_620809
RGD:
621217
Ensembl:
ENSRNOG00000000988
UniProt:
Q99PK0
A6KQ13
LinkDB
All DBs
Position
12:complement(6465569..6477616)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgagttccgcgtcccgagcggccggatcttgtttttgaggaagaa
gaccttccctatgaggaagaaatcatgaggaaccagttctctgtcaaatgctggctccgc
tacatcgagttcaaacagggggcccccaaaccccgactcaatcagttgtacgagcgggca
ctgaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggcg
caggtgaaacatcgctgtgtgactgaccctgcctatgaagatgtcaacaactgccatgag
agggccttcgtgttcatgcacaagatgccacgtctatggttagactattgccagttcctc
atggaccagggccgagtcacacacacccgccgcacctttgaccgcgccctcagggcactg
cccatcacccagcactctcgcatctggcccctgtatctgcgtttcctgcgctctcacccg
ctgcctgagactgctgtgcgaggctaccgtcgcttcctcaagctgagtcctgagagtgct
gaggagtacatcgagtacctcaagtccagtgaccggctagacgaggctgcacagcgcctg
gccacagtggtgaatgacgagcgctttgtgtccaaggctggtaaatccaactaccagctg
tggcacgagctgtgtgaccttatctcccagaatccagacaaggtacagtctctcaatgtg
gatgccataatccgtggtgggctcacccgcttcaccgaccagctgggcaagctatggtgc
tccctggcagactactatatccgcagtggccactttgaaaaggctcgggatgtgtatgag
gaagccatccgcactgtgatgaccgtgcgggacttcacccaggtgtttgacagctatgcc
caattcgaggagagcatgattgcagcgaagatggagactgcctctgaactggggcgtgag
gaggaggatgatgtggatctggagctgcgcctggcccgctttgagcagctcataagccgg
cggcccctgcttctcaacagtgtccttctgcgccagaacccacaccacgtccacgagtgg
cacaagcgtgtagccctgcatcagggccgccctcgggagattatcaacacctacacagag
gccgtgcagacagtagaccccttcaaagccacgggcaagccccacaccctgtgggttgca
tttgccaagttttatgaagacaacggacagctggacgatgctcgtgtcatcctagagaag
gccaccaaggtgaacttcaagcaggtggacgacctggcaagtgtgtggtgccagtgcggg
gagctggagctccggcatgagaattacgatgaggcattaaagctgcttcggaaagcgaca
gctttgcctgcccgccgggctgagtacttcgatggttcagagcctgtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgccgacctggaggaaagcttgggcactttc
cagtcaaccaaggcagtgtatgaccgaatcctggacctgcgcatagccacaccacagatt
gtcattaactatgccatgtttctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgtggcatctcgctgttcaagtggcccaatgtttccgacatctggagcacctac
ctgaccaaattcatctcccgctacgggggccgcaagctggagcgtgcacgggatctcttt
gagcaggcactagatggctgcccaccaaaatatgccaagactttatacctgctttacgca
cagctggaggaggagtggggccttgcccgccatgccatggctgtgtatgaccgtgctacc
agggcagtggagccagcccagcagtacgacatgtttaacatctacatcaagcgggctgct
gagatctacggtgtcacccacactcgcggcatctaccagaaggccattgaggtgctgtct
gatgagcatgcccgtgagatgtgcctgaggtttgcagacatggagtgcaagctcggcgag
atcgaccgtgcccgggctatctacagcttctgctcccagatctgtgatccccggacaact
ggggcattctggcaaacgtggaaggactttgaggtccggcacggcaacgaggacaccatc
agggagatgctgaggatacggcggagtgtgcaggccacgtacaacactcaggtcaacttc
atggcttcgcagatgctcaaggtgtcgggcagtgccacgggcacggtgtctgacctggct
cccgggcagagcggcatggatgacatgaagttgctggaacagagagcagaacagctagcg
gccgaggcagagcgggaccagccccccagggcccagagcaagatcttctttgtgaggagt
gatgcatccagggaggaattggcagagctggctcagcaggccaaccctgaggaaatccag
ctgggcgaggacgaggacgaggacgagatggacctggaacccaatgaagtccgactggaa
cagcagagtgtgccagctgctgtgttcgggagcctaaaggaagactga
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