Rattus norvegicus (rat): 246216 Help Entry 246216            CDS       T01003                                  Symbol Prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism rno  Rattus norvegicus (rat) Pathway rno03040   Spliceosome rno04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:rno00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     246216 (Prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     246216 (Prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:rno03041]     246216 (Prpf19)    04121 Ubiquitin system [BR:rno04121]     246216 (Prpf19)    03400 DNA repair and recombination proteins [BR:rno03400]     246216 (Prpf19) Enzymes [BR:rno01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      246216 (Prpf19) Spliceosome [BR:rno03041]  Complex B   Other components    Prp19 complex     246216 (Prpf19)  Complex C    Prp19-CDC5 complex     246216 (Prpf19) Ubiquitin system [BR:rno04121]  Ubiquitin ligases (E3)   U-box type E3    246216 (Prpf19) DNA repair and recombination proteins [BR:rno03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     246216 (Prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_IFT122_1st U-box Beta-prop_Vps41 Beta-prop_DCAF4 PEP5_VPS11_N Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_SPT8 eIF2A Beta-prop_Nup120_160 PROPPIN Cytochrom_D1 RMC1_N Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N zf-Nse Beta-prop_LRRK2 DUF1830 ATG16 Cep57_MT_bd Motif Other DBs NCBI-GeneID:  246216 NCBI-ProteinID:  NP_647549 RGD:  708496 Ensembl:  ENSRNOG00000020897 UniProt:  Q9JMJ4 A6I070 LinkDB All DBs Position 1:216966104..216977549 Genome browser AA seq 504 aa AA seqDB search MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG GADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQ VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG VAFGHHAKFIASTGMDRSLKFYSL NT seq 1515 nt NT seq  +upstreamnt  +downstreamnt atgtccctgatctgctcgatctccaacgaagtgccagagcacccatgcgtgtcccctgtc tctaatcatgtgtatgagcggcgactcattgagaagtacattgcagagaatggcacagat cctatcaacaaccagcctctctcagaggagcagctcatcgacatcaaagttgctcatcca atccggcccaagcctccctctgccaccagcatcccagccattctgaaagccttgcaggat gagtgggatgcagtcatgctgcacagcttcactcttcgccagcagctgcagacaacccgc caggaactgtcccacgctctgtaccagcacgatgctgcctgccgagtcattgcccggctc accaaggaggtcactgctgctcgagaagctctggctactctgaaaccacaggctggtctt attgtacctcaggctgtgccaagctcacagcccagtgttgtgggtgcaggagagcccatg gatttgggtgagcttgtgggaatgacccctgagattatccagaagcttcaagacaaggcc actgtactaaccacggagcgtaagaagagaggaaaaactgtccctgaggagctggtgaag cctgaagagctcagcaagtaccggcaggtggcatcccatgtggggctacacagtgctagc attcctgggattcttgctctggacctgtgtccctcagacaccaacaagattcttactggt ggggcagataaaaacgttgttgtctttgataagagtactgagcaaatcctggccactctc aaaggccataccaagaaggtcaccagtgtggtgtttcatccttctcaggaattggtgttt tctgcgtcccctgatgctactatcaggatttggtccgtcccgaacacttcttgtgtacag gttgttcgggcccatgagagtgcggtgacaggactcagcctccatgccactggagactat ctactgagctcctctgatgatcagtactgggcgttctctgacattcagacagggcgtgtg ctcaccaaggtgacagatgagacttccggctgctctcttacctgtgcacagttccaccct gatggcctcatctttggaacaggaaccatggactcccagatcaagatctgggacttgaag gaacgcaccaatgtggcgaacttccctggccactccggccccattaccagcattgccttc tctgagaatgggtactacctggccacggcagctgatgactcctcagtcaagctctgggac ttacgcaagttgaagaacttcaagacattgcagctggacaacaactttgaggtgaagtca ctaatctttgaccagagtggcacctacctggcgcttgggggtacagatgtccagatctac atctgcaaacagtggacagagattcttcactttacagagcatagtggcctgaccactgga gtggcctttgggcaccacgccaagttcatcgcttcaaccggcatggacaggagcctcaaa ttctacagtctgtag

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